Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2149 ATGGGGAAGCCGACAGGGAAGAAGCATCAGCATCAGAATCAGCAGAATCCTCCCTCGGCGACTTCACGGGCCGCCGGCCCAACTTCCAAGCCCACGCCGAAGCCCAAACCTGCCGCCTTCGACGAAGACACAGCGATGTTCATAACCATGTCTCAGGAGCTTCGTGAAGAAGGCAACCGCCTCTTCCAAAAGCAGGACCACGAGGGAGCCATGTTAAAGTACGAAAAAGCCCTCAATCTTCTCCCACGCAACCACATCGACGTCGCAAACCTCCGCACCAGCATGGCCCGATGCTACACGCGCCTCGGCCTCGGCGAGTACCCACGCGCCATCCACCAGTGTAACCTCGCTCTTCAGGTCTCACCTAAGTACACTAGGGCTCTGTTGAAGCGTGCCAAGTGCTATCAGGCTTTGAATCGGTTGGACTTGGCGTTGAGGGATGTTCGGGCTGTGTTGGGCCTCGAACCCAATAACCTTGCCGCCTTGGAGTTCATGGAGGGATTGAGGAAGGTCATGGAAGAGAAAGGGTTGGTTCTTGAGGAAGAACAGGAGGTAGATTTTGGTTCTGGTGCTGGTGCCAAAGAGACGCCTGCTACGTGTTTGAAGAAAGTTCCGAGAGAGAAATCACAGAAGAAGAAGAAGGGGAAGAGGGTTGATGATGAGGATAAGGCCGTTGCGGATAAGGATAAGGAGGTTGTTGTTGAGGAGAGTGCGGATGGTGATGCCGTGCAGGACAAGGAAGTGGTTAGCAGGATGGTTGAGGTTGAGGAAGAGAAGGTTGTGAAAGAGGAGAAGCTGGTTGAGGAAGAAAAGGTTGTGAAAGAGGAGAAGCTTGTGGAGGGAGAAAAGGGTGTCGCAAGGACGGTGAAGTTGGTGTTTGGAGAGGATATTAGATGGGCACAGCTTCCTGCCAATTGTAGTGTGAGGTTGGTGAGGGATATAGTTAGGGATCGGTTTCCGGGTTTGAAGGGTGTTCTTGTGAAGTATAGGGATGAGGAGGGTGATTTGGTTACGATTACTACCACTGATGAGCTGAGGTTAGCTGAATCTGCTGTTCATGAGAATGGCTCAATTCGGTTTTATATTAGTGAGGTTGATTTGGACCAAGAGCCATGTTATGATCGAGTAACCAATGAGGGTGACACCCAAGAAGACGGTAGTAAAAGGAATCTGGGCGATAGTGTTCAGAATGGGGGTGTGGGACAAGATACGGTTTTGGAAAATAATAATAACAAGATGACTGCTATGGAGGAATGGATTTTGCAGTTTGCACGGCTGTTCAAGAATCATGTTGGGTTTGATTCAGACTCTTATCTAGATTTTCATGAGCTGGCAATGAGTCTCTATGCAGAGGCAATGGAGGATACAGTAACAGGCGATGATGCTCAAGAATTATTTGAGATTGCTGCAGACAAATTTCAAGAGATGTCAGCGTTAGCAATGTTTAATTGGGGGAATGTTCACATGTCCAAGGCAAGGAACAGGGCTTTCTTTGCAGAGGATGGGTCAAGAGAACCTTCTTTCGAGCATGTTAAAGCTGCATACGAGTGGGCCCTAAATGAGTACAAGAAAGCTGAGATGAGGTATGAGGAGGCCTTGAAGATCAAACCGGATTTTTTTGAAGGATATCTTGCTCTTGGACATCAGCAGTTTGAGCAAGCAAGGCTATGCTGGTGTTATGCGTTGGCATGCAAAGTGAATTTAGAAGCTGGTCCTTCCGAGGAGGTTCTTCAGCTCTACAACAAGGCAGAGGACAGCATGGAGAAAGGGATCTTGATGTGGGAGGAGATTGAAGAGCAGCGTTTAAATGGACTATCCAAATCCGATAAATATAGAGCGCAATTAGAGAAAATGGGCATGGATAGGCTTCTCAAGGATATCTCGTCGGATGAAGCTTCAAAGAAGGCAACAAAGATGAAGTCACAAATATATCTTTATTGGGGTACCCTATTGTATGAACGTTCTGTTGTGGAATATAAGCTAGGACTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTCGAAAAGTTTGAGCTAGCTGGAGCTTCAGCAACGGATGTAGCTGTCATTATAAAGAATCACTGCTCTCATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAAATGTATGATGCTCAAGGCTGGCTGTTTCGTGCTCCATCATTTCGACTTGAAGCATTGTTTCGTCGGCGCATTCCTAAACTACATTACATCTTGGAGCAACTTTAA 2250 0.4738 MGKPTGKKHQHQNQQNPPSATSRAAGPTSKPTPKPKPAAFDEDTAMFITMSQELREEGNRLFQKQDHEGAMLKYEKALNLLPRNHIDVANLRTSMARCYTRLGLGEYPRAIHQCNLALQVSPKYTRALLKRAKCYQALNRLDLALRDVRAVLGLEPNNLAALEFMEGLRKVMEEKGLVLEEEQEVDFGSGAGAKETPATCLKKVPREKSQKKKKGKRVDDEDKAVADKDKEVVVEESADGDAVQDKEVVSRMVEVEEEKVVKEEKLVEEEKVVKEEKLVEGEKGVARTVKLVFGEDIRWAQLPANCSVRLVRDIVRDRFPGLKGVLVKYRDEEGDLVTITTTDELRLAESAVHENGSIRFYISEVDLDQEPCYDRVTNEGDTQEDGSKRNLGDSVQNGGVGQDTVLENNNNKMTAMEEWILQFARLFKNHVGFDSDSYLDFHELAMSLYAEAMEDTVTGDDAQELFEIAADKFQEMSALAMFNWGNVHMSKARNRAFFAEDGSREPSFEHVKAAYEWALNEYKKAEMRYEEALKIKPDFFEGYLALGHQQFEQARLCWCYALACKVNLEAGPSEEVLQLYNKAEDSMEKGILMWEEIEEQRLNGLSKSDKYRAQLEKMGMDRLLKDISSDEASKKATKMKSQIYLYWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASATDVAVIIKNHCSHETALEGFKIDEIVQAWNEMYDAQGWLFRAPSFRLEALFRRRIPKLHYILEQL* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2149 749 MobiDBLite consensus disorder prediction 1 40 - -
Amo08g2149 749 MobiDBLite consensus disorder prediction 374 405 - -
Amo08g2149 749 CDD PB1 288 363 - -
Amo08g2149 749 ProSiteProfiles TPR repeat profile. 125 158 IPR019734 GO:0005515
Amo08g2149 749 SMART tpr_5 51 84 IPR019734 GO:0005515
Amo08g2149 749 SMART tpr_5 89 124 IPR019734 GO:0005515
Amo08g2149 749 SMART tpr_5 506 539 IPR019734 GO:0005515
Amo08g2149 749 SMART tpr_5 125 158 IPR019734 GO:0005515
Amo08g2149 749 SUPERFAMILY CAD & PB1 domains 285 376 - -
Amo08g2149 749 SMART PB1_new 286 365 IPR000270 GO:0005515
Amo08g2149 749 PANTHER PROTEIN CLMP1 1 748 IPR044517 -
Amo08g2149 749 ProSiteProfiles TPR repeat profile. 51 84 IPR019734 GO:0005515
Amo08g2149 749 MobiDBLite consensus disorder prediction 389 405 - -
Amo08g2149 749 MobiDBLite consensus disorder prediction 7 28 - -
Amo08g2149 749 SUPERFAMILY TPR-like 475 647 IPR011990 GO:0005515
Amo08g2149 749 MobiDBLite consensus disorder prediction 374 388 - -
Amo08g2149 749 SUPERFAMILY TPR-like 49 165 IPR011990 GO:0005515
Amo08g2149 749 Coils Coil 252 272 - -
Amo08g2149 749 Gene3D Tetratricopeptide repeat domain 44 187 IPR011990 GO:0005515
Amo08g2149 749 PANTHER PROTEIN PHOX4 1 748 - -
Amo08g2149 749 MobiDBLite consensus disorder prediction 203 224 - -
Amo08g2149 749 Gene3D Tetratricopeptide repeat domain 411 610 IPR011990 GO:0005515
Amo08g2149 749 Gene3D - 282 365 - -
Amo08g2149 749 ProSiteProfiles PB1 domain profile. 286 365 IPR000270 GO:0005515
Amo08g2149 749 Pfam PB1 domain 287 361 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2149 Amo-Chr8 34342172 34346898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2149 39 158 Calmodulin-binding Proteins AT3G25230 27.132 4.21e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2149 - - gmx:100805760 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3678 16 147719323 147723578 Amo08g2149 08 34342172 34346898 PCT
Amo08g2149 08 34342172 34346898 Amo16g3678 16 147719323 147723578 PCT