Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2125 ATGGGCATTCCTTCTTTCACAGTGATGCTTGCATACATGCTTTATTCTTCTTCTCTTGCCATAGAACTTGATTCTCTTCATGTTTCTCAGTCCCTCAGTGATGGCATGACCTTAGTGTCACAAGGTGGAAAATTTGAACTTGGTTTCTTCAGCCCTGGTAATTCTTCACACAAGCGTTACTTGGGAATTTGGTACAAGAATATTCCAATTCAGACAGTTGTTTGGGTTGCCAATAGGGCCAACCCCATCATTGATTTCTCAGGAATTTTAACAGTTAACAGCACAGGCAATCTTTTACTCACAGAAAATGGCACTGAGATTACTTTTTGGAGCACAATCTCTCAAAAACAAGCAAAGAATCCGGTATTGAAGCTCTTGGACAGTGGCAATCTTGTGTTAAGAAATGAAGGGGAATCAAATCCAAAGGCCTATTTGTGGCAAAGCTTTGATTATCCTTCAGATACATACTTGCCAACGATGAAGTTAGGAAGGGACCTCCGAAATGGTTTGGATTGGCGCATAACTTGTTGGAAGAGTCCAAATGATCCATCCCCTGGAGACTTCTCTCTTGGTTTAGCTCTCAGTGATTATCCAGTCTATTACATGATGAATGGCACGCAAAAAGTATATCGGGCTGGACCTTGGAATGGCCTTTACTTCAGTGGATTCCCAGATCTGTCCTTTACATATGTTTTTGAAGTCACTTTTGTCACAAACAAGGATGAGATATCCTATAGTTATAACACCAAGGTTGATTCTATCATTACAAGAGCTTTAATAAGCCAAACAAGTCAATCTCTTACGCAGTATATATGGGATGACGATCTTCAGAATTGGAAAAGTTTTGGATCAAAGCCAGTTGATGTGTGTGATAAATATGACCTTTGTGGAGCCTTTAGTTATTGCAGTGTAGCAGAATCAAAGCATGTCTGCCAATGCTTTAAAGGGTTCAGTCCTAAGTCACCAGAAGCATGGAACTCAAACAACTCCTCACAAGGATGCATTCGCGACAAACCATTAAGCTGCAATAATGTCACAAGCACTGATGGTTTTGTCAAATACACAGGCTTGAAAGTGCCGGATACTCAGCATACTAAGCTGCATGAGAATATTAATTTAGATGAATGCAGAAATCTGTGTTTGAAGAACTGCTCTTGTATGGCTTATGCCAATTCAGACATAAGAGGAGGAGGCAGTGGCTGCGCCATGTGGTTCGGTGATCTAATTGACATCAAACTGTTTCAATCTGGTGGACAGGATCTGTACATTCGAATGCCTGCTTTGGAATCAGGACTTCAACATCGGAACATGAAAAAAGTGATAATTGCTAGCACCATTGCTGCATCTTCTGCAACACTTCTACTTTGTGTTTACGTTATATACAGACTCCGAAGGAACAATATTGAAAAATCAAAGATAGAAGGATATATGGAAGGGTACGTAAATGATGCGGATCTACCACTGTTTGATCTACTAACAATTACTACTGCCACCCAAAAGTTCTCGTTGAATAACAAGATTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAAGATTAGCAGATGGACTTGAAATTGCTGTGAAAAGACTCTCACATAGCTCTACACAAGGAATGACTGAATTCATAACTGAAGTAAAGCTAATTGCGAAACTTCAGCACCGTAATCTAGTAAAACTTCTTGGTTGCTGCATTCAAGGAGAAGAAATTTTGTTAGTTTATGAATATGTGGTTAATGGTAGCCTGGACACCTTCATCTTTGATCAAACAAAAAGTAAGTTGTTGGATTGGCCTCAACGCTTGGGCATAATATTTGGACTTACTAGGGGACTCTTATATCTTCATCAAGATTCAAGATTGAGGATTATCCATAGAGATCTCAAAGCAAGTAACGTTTTACTCGATGACAAATTAAATCCAAAAATATCAGATTTTGGAACGGCCAGAACTTTTGGAGGAGATCAAACTGAAGGAAACACAAATAGAGTCGTTGGGACTTATGGATACATGGCACCAGAGTATGCTATAGATGGATTATTATATGTGGGACCAAAAATAGAGCTCTTTGCCATGCAAATCAGACTCTCAATCTCATTGGCTTGGAGACTATGGAAAGAGGAGAAGGCTTTAGAGTTGATAGATTCAACTATAAAGGAGTCATGTATAATCTCAGAAGTAATGCGTTGCATCCATGTGAGTCTGTTGTGTGTACAACAATACCCTGAAGATAGGCCTACAATGGCTTCTGTGCTTCTCATGTTAGCAAGTGAGATGGATTTAGATGAGCCTAAAGAGCCTGGCTTCTTTCCCAAGTGGGTCTCTATCGAAGCGAATTCGCAGCCACATCAATGTGAAGTATCTACAAATGATGAATTAACCGTTACCTCATTAGATGGCCGAAAGCATAGAAAAGTAATGAGGAACAAAGAGTCAAGATAG 2439 0.3973 MGIPSFTVMLAYMLYSSSLAIELDSLHVSQSLSDGMTLVSQGGKFELGFFSPGNSSHKRYLGIWYKNIPIQTVVWVANRANPIIDFSGILTVNSTGNLLLTENGTEITFWSTISQKQAKNPVLKLLDSGNLVLRNEGESNPKAYLWQSFDYPSDTYLPTMKLGRDLRNGLDWRITCWKSPNDPSPGDFSLGLALSDYPVYYMMNGTQKVYRAGPWNGLYFSGFPDLSFTYVFEVTFVTNKDEISYSYNTKVDSIITRALISQTSQSLTQYIWDDDLQNWKSFGSKPVDVCDKYDLCGAFSYCSVAESKHVCQCFKGFSPKSPEAWNSNNSSQGCIRDKPLSCNNVTSTDGFVKYTGLKVPDTQHTKLHENINLDECRNLCLKNCSCMAYANSDIRGGGSGCAMWFGDLIDIKLFQSGGQDLYIRMPALESGLQHRNMKKVIIASTIAASSATLLLCVYVIYRLRRNNIEKSKIEGYMEGYVNDADLPLFDLLTITTATQKFSLNNKIGQGGFGPVYKGRLADGLEIAVKRLSHSSTQGMTEFITEVKLIAKLQHRNLVKLLGCCIQGEEILLVYEYVVNGSLDTFIFDQTKSKLLDWPQRLGIIFGLTRGLLYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGTARTFGGDQTEGNTNRVVGTYGYMAPEYAIDGLLYVGPKIELFAMQIRLSISLAWRLWKEEKALELIDSTIKESCIISEVMRCIHVSLLCVQQYPEDRPTMASVLLMLASEMDLDEPKEPGFFPKWVSIEANSQPHQCEVSTNDELTVTSLDGRKHRKVMRNKESR* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2125 812 SMART ntp_6 346 425 IPR003609 -
Amo08g2125 812 PIRSF SRK 2 800 IPR024171 GO:0004674
Amo08g2125 812 CDD PAN_AP_plant 339 426 - -
Amo08g2125 812 Gene3D - 19 149 IPR036426 -
Amo08g2125 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Amo08g2125 812 Pfam D-mannose binding lectin 72 178 IPR001480 -
Amo08g2125 812 CDD B_lectin 29 152 IPR001480 -
Amo08g2125 812 ProSiteProfiles PAN/Apple domain profile. 342 426 IPR003609 -
Amo08g2125 812 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 796 - -
Amo08g2125 812 Pfam S-locus glycoprotein domain 210 321 IPR000858 GO:0048544
Amo08g2125 812 SMART blect_4 29 152 IPR001480 -
Amo08g2125 812 Gene3D Hepatocyte Growth Factor 342 422 - -
Amo08g2125 812 ProSiteProfiles Bulb-type lectin domain profile. 23 146 IPR001480 -
Amo08g2125 812 Gene3D Phosphorylase Kinase; domain 1 477 576 - -
Amo08g2125 812 Gene3D Transferase(Phosphotransferase) domain 1 577 765 - -
Amo08g2125 812 SUPERFAMILY Protein kinase-like (PK-like) 484 754 IPR011009 -
Amo08g2125 812 ProSiteProfiles Protein kinase domain profile. 501 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2125 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Amo08g2125 812 Pfam Protein kinase domain 502 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2125 812 SMART serkin_6 501 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2125 812 PANTHER - 23 796 - -
Amo08g2125 812 Pfam PAN-like domain 345 411 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2125 Amo-Chr8 34091674 34095339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2125 440 771 Receptor kinase-like Gene Family AT4G23190 48.596 6.00e-106 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g2125 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2125 - - aip:110265385 1346.26