Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2120 ATGGGCATTCCTTCTTTCACAGTGATGCTTGCTTACATGCTTTCTTCTTCTTCTCTTGCCATAGAACTTGATTCTATTCATGTTTCCCAGTCCCTCAGTGATGGCATGACCTTAGTGTCACAAGGTGGAAAATTTGAACTTGGTTTCTTCAGCCCTGGTAATTCTTCACACAAGCGTTACTTGGGAATTTGGTACAAGAAAATTCCAATTCAGACAGTTGTTTGGGTTGCCAATAGGGCCAACCCCATCAATGATTTCTCAGGAATTTTAACAATGAATAGCACAGGCAATCTTTTACTCACCAAAAATGGCACGGAGACTACTTTTTGGAGCACAATCTCTCGAAAACAAGCAAAGAATCCAGTATTGGAGCTCTTGGAAAGTGGCAATCTTGTGTTAAGAAATGAAGAGGAATCAAATCCAAAGGCCTATTTGTGGCAAAGCTTTGATTATCCTTCAGATACGTTCTTGCCAACCATGAAGTTGGGAAGGGACCTCCGAAATGGTTTCAATCGGCGCATAACTTCTTGGAAGAGTCCAAATGATCCATCCCCTGGAGACCTTTCTATCGGTTTAGTTCTAAATGATTATCCAGTCTATTACATGATGAATGGCACAAAAAAATTATTCAGGGCTGGACCTTGGAATGGCCTATACTTCAGTGGAGAACCAAATCTGTCCCATACATATATTTTTGAAGTCAGTTTTGTCACAAACAAGGATGAGATATACTTTAGTTTTAACACCAAGGTTGATTCTATCACTGGAAGAGGTGTAATAAGCCAAACAAGTCAATCTCTTGCACACTATTTATGGGATGACAATCTTAAGAATTGGAAATTTTCTGGATCATGGCCAGGTGATGTGTGTGATAAATATGACCTTTGTGGAGCCTATGCTTATTGCAGTGTAGCAGAATCAAAGCATGTCTGCCAATGCTTTAAAGGATTCAGTCCAAAGTCACCAGAAGAATGGAACTCAAACAACTCCTCACAAGGATGCATTCGCGACAAACCACTAAGCTGCAATGTCACAACTAGTGATGTGTTTGTCAAATATACTGGCTTGAAAGTGCCAGATACTCAGCATACTAAGGTGGATGAGAATATTACTTTAGATGAATGTAGAAATCTTTGTTTGAAGAACTGCTCTTGCATGGCTTATACCAATTCAGACATAAGAGGAGGAGGCCGTGGCTGCGCCATGTGGTTTGGCAATCTAATTGACATCAAAATGATTCAATCTGGTGGACAAGATCTATATATCCGAATGCCTGCTTTTGAGTCAGGATTTCAACAACGGCACAAGAAAAAAGTGATAATTGCTAGCACTATTGCTGCATTTTGTGCAACACTTCTACTTTGTGTTTATGTTATATACAGAATCCGAAGGAACAATATTGAAAAATCAAAGATAGAAGAATATATGGAAGGGCATGTAAATGATACGGATCTACCATTGTTTGATCTACTAACAATTACTACTGCCACACACAAGTTCTCGTTGAATAACAAGATTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAAAATTAGCAGATGGTCTTGAAATTGCTGTGAAGAGACTCTCACATAGCTCTACACAAGGAATGACCGAATTCATAACTGAAGTAAAGCTAATTGCGAAACTTCAGCACCGTAATCTAGTAAAACTTCTTGGTTGCTGCATTCAAGGAGAAGAAATTTATCAAACAAAAGGTAAGTTGTTGGATTGGCCTCAACGCTTGGGCATAATATTTGGAATTACTAGGGGACTCTTATATCTTCATCAGGATTCAAGATTGAGGATTATTCATAGAGATCTCAAAGCAAGTAACGTTTTACTCGATGACAAATTAAATCCAAAAATATCAGATTTTGGAACGGCCAGAACTTTTGGAGGAGATCAAACTGAAGGAAACACAAATAGAGTCGTTGGGACTTATGGATACATGGCACCAGAGTATGCTATTGACGGTTTGTATTCTATAAAATCCGATGTCTTCAGCTTTGGCATACTTATGATGGAAATTATATGTGGGACTAAAAATAGAGCTCTTTGCCATGCAAATCAAACTCTTAACCTCATTGGCTATGCTTGGAGGCTATGGAAAGAGGAGAAGGCTTTAGAGTTGATAGATTCAAGCATAAAGGAGTCATGTGTAATCTCAGAAGTATTGCGATGCATCCATTTGAGTCTGTTGTGTGTACAACAATACCCTGAAGATAGGCCTACAATGGCTTCTGTGCTTCTCATGTTAGCAAGTGAGATGGATTTAGTTGACCCTAAAGAGCCTGGCTTCTTTCCCAAGAGGGTTTCTATCGAAGCGAATTCGCAGCCACATCAATGTGAAGTATCTACAAATGATGACTTAACCATTACCTCATTAGATGGCCGTATCCAAACAATGAAGTAA 2418 0.3912 MGIPSFTVMLAYMLSSSSLAIELDSIHVSQSLSDGMTLVSQGGKFELGFFSPGNSSHKRYLGIWYKKIPIQTVVWVANRANPINDFSGILTMNSTGNLLLTKNGTETTFWSTISRKQAKNPVLELLESGNLVLRNEEESNPKAYLWQSFDYPSDTFLPTMKLGRDLRNGFNRRITSWKSPNDPSPGDLSIGLVLNDYPVYYMMNGTKKLFRAGPWNGLYFSGEPNLSHTYIFEVSFVTNKDEIYFSFNTKVDSITGRGVISQTSQSLAHYLWDDNLKNWKFSGSWPGDVCDKYDLCGAYAYCSVAESKHVCQCFKGFSPKSPEEWNSNNSSQGCIRDKPLSCNVTTSDVFVKYTGLKVPDTQHTKVDENITLDECRNLCLKNCSCMAYTNSDIRGGGRGCAMWFGNLIDIKMIQSGGQDLYIRMPAFESGFQQRHKKKVIIASTIAAFCATLLLCVYVIYRIRRNNIEKSKIEEYMEGHVNDTDLPLFDLLTITTATHKFSLNNKIGQGGFGPVYKGKLADGLEIAVKRLSHSSTQGMTEFITEVKLIAKLQHRNLVKLLGCCIQGEEIYQTKGKLLDWPQRLGIIFGITRGLLYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGTARTFGGDQTEGNTNRVVGTYGYMAPEYAIDGLYSIKSDVFSFGILMMEIICGTKNRALCHANQTLNLIGYAWRLWKEEKALELIDSSIKESCVISEVLRCIHLSLLCVQQYPEDRPTMASVLLMLASEMDLVDPKEPGFFPKRVSIEANSQPHQCEVSTNDDLTITSLDGRIQTMK* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2120 805 PIRSF SRK 3 800 IPR024171 GO:0004674
Amo08g2120 805 PANTHER - 23 796 - -
Amo08g2120 805 SUPERFAMILY Protein kinase-like (PK-like) 480 754 IPR011009 -
Amo08g2120 805 Gene3D Phosphorylase Kinase; domain 1 475 568 - -
Amo08g2120 805 Pfam D-mannose binding lectin 72 178 IPR001480 -
Amo08g2120 805 Pfam Protein kinase domain 501 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2120 805 Pfam PAN-like domain 342 410 IPR003609 -
Amo08g2120 805 CDD B_lectin 29 152 IPR001480 -
Amo08g2120 805 SMART blect_4 29 152 IPR001480 -
Amo08g2120 805 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 796 - -
Amo08g2120 805 Gene3D Hepatocyte Growth Factor 341 422 - -
Amo08g2120 805 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Amo08g2120 805 SMART ntp_6 345 424 IPR003609 -
Amo08g2120 805 SMART serkin_6 500 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2120 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Amo08g2120 805 CDD PAN_AP_plant 339 425 - -
Amo08g2120 805 Gene3D Transferase(Phosphotransferase) domain 1 569 763 - -
Amo08g2120 805 ProSiteProfiles Bulb-type lectin domain profile. 23 146 IPR001480 -
Amo08g2120 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Amo08g2120 805 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Amo08g2120 805 Gene3D - 19 149 IPR036426 -
Amo08g2120 805 Pfam S-locus glycoprotein domain 210 321 IPR000858 GO:0048544
Amo08g2120 805 ProSiteProfiles Protein kinase domain profile. 500 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2120 Amo-Chr8 34054924 34059103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2120 439 771 Receptor kinase-like Gene Family AT4G23190 50.843 2.07e-113 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g2120 Pkinase 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2120 - - aip:110265385 1528.07