Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2107 ATGAAGACTGAATCTATTCCTAGAAAAAGGAGATCGCGCAGGAGACGCAGTGGAGGAAGTGATTCAGTAGAGAGTACTCTTGAGAAGTGGAAGGAGTACAATAAACAGCAACAACAACTAATCAGTGAAAGAGATGGGGTTGAAATAATTCACAAGGTTCCTAAAGGATCGAAAAGAGGGTGTATGAAAGGCAAAGAAATCCGCAAACCTATCAATAGCAAGAGTGTTGGTGAAGAAGCAAACAAGCTTTGGCTTGGAACCTTTTCTACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCAAGGACCATGTATGGCCCTGGTGCTCGTTTGAACTTCCCTCAGCATCATGGCATAGAATTAGTAGGTTCTAATGGATCATCTATTAGTCCAGTATTTGATCAGAAATCACCAAGTGAAACCGATATAGATACTTTGAATGGTGGTGATGTTGCAAAAGTTGACGGGTTGGAGGGAAATCTTGATATGGGTCTCGAAGAACAACTCAAGTTTTCTGAGGTAAATGAATTATTGGAGATGGAATGTGAGGGAGGAATTCTTCAAGGGCCTTTTAAGTATGTAAAGGACGAAGTTGCTGGAGGAAGTGAAGGATTAGAAGGAGAGTTAGAGGAGGTTTTGAAAAACTCTGGTTTAGTTGAAGAGTGTAATAATTACATGCTAGAGGATTCTATGTGCATGGCTACGAATACAGAAGCTGATTATAACTCTTGTGATGCTACTGAACAGGGGATTATGGGGAAGAGTGAAGTGAAAAATTATAAATCCAAACAGTAA 798 0.4035 MKTESIPRKRRSRRRRSGGSDSVESTLEKWKEYNKQQQQLISERDGVEIIHKVPKGSKRGCMKGKEIRKPINSKSVGEEANKLWLGTFSTALEAALAYDEAARTMYGPGARLNFPQHHGIELVGSNGSSISPVFDQKSPSETDIDTLNGGDVAKVDGLEGNLDMGLEEQLKFSEVNELLEMECEGGILQGPFKYVKDEVAGGSEGLEGELEEVLKNSGLVEECNNYMLEDSMCMATNTEADYNSCDATEQGIMGKSEVKNYKSKQ* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2107 265 Gene3D AP2/ERF domain 28 117 IPR036955 GO:0003700|GO:0006355
Amo08g2107 265 SMART rav1_2 63 121 IPR001471 GO:0003700|GO:0006355
Amo08g2107 265 ProSiteProfiles AP2/ERF domain profile. 43 115 IPR001471 GO:0003700|GO:0006355
Amo08g2107 265 SUPERFAMILY DNA-binding domain 80 116 IPR016177 GO:0003677
Amo08g2107 265 MobiDBLite consensus disorder prediction 1 16 - -
Amo08g2107 265 MobiDBLite consensus disorder prediction 1 28 - -
Amo08g2107 265 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 66 246 - -
Amo08g2107 265 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 65 - -
Amo08g2107 265 CDD AP2 66 117 IPR001471 GO:0003700|GO:0006355
Amo08g2107 265 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 66 246 - -
Amo08g2107 265 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2107 Amo-Chr8 33932804 33933948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2107 13 115 AP2-EREBP Transcription Factor Family AT2G40350 42.975 4.49e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2107 - - ahf:112708474 485.337