Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2097 ATGGTACAGGCAAAGAAGTTCAGAGGAGTGAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAGATTCGCCACCCTCTCCTGAAGAGGAGGGTGTGGCTGGGAACGTTTGAGACAGCAGAAGCAGCAGCAAGGGCTTATGATCAAGCAGCGATTTTGATGAATGGCCAAAATGCAAAGACCAATTTCCCTTCAACAAAGAACAACCAACAATCTCATCATCATAATAACAATGCAACAACAACAACAACAACAACTTCTTCTTCTTCTTGCAATGATGATTCTTCTTTCTTGTCTCCCAAGGCACTCTCAGAGCTTCTCAGTGCAAAGCTCAAGAAGTGCTGCGGCAAGGACCCTTCTTCTCCTTCCCTCACTTGTCTCCGCCTCGACGCCGACAACTCCCACATCGGCGTCTGGCAAAAGGGCCCCGGAAGACACTCCGATTCCAGTTGGGTCATGAGGGTTGAGCTTGGCAGCAAGAACCACAACCACCAGCAAAAACAACACGAGGGTAATAAGGTCATTTTCCCATCTTCACCAAGTAATAATAACATCACTAACAACAACAACAATAATAATAATGTTGTTGTTATTGGAGAGAATGATGATGAAAATAGAATTGAAGAAGAGAACAGGGTTGCCATGCAGATGATTGAAGAGCTTCTGAATTGGAACAACTATCCATTTGGTAGTTCTTCAAGTAACAATAATAATAATTCTCAGCAGCAACAACAAGAAGATCAGAAAAGGAACCTTCCATGTCACAGTTCTTGA 771 0.4462 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPSTKNNQQSHHHNNNATTTTTTTSSSSCNDDSSFLSPKALSELLSAKLKKCCGKDPSSPSLTCLRLDADNSHIGVWQKGPGRHSDSSWVMRVELGSKNHNHQQKQHEGNKVIFPSSPSNNNITNNNNNNNNVVVIGENDDENRIEEENRVAMQMIEELLNWNNYPFGSSSSNNNNNSQQQQQEDQKRNLPCHSS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2097 256 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Amo08g2097 256 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Amo08g2097 256 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 225 - -
Amo08g2097 256 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Amo08g2097 256 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Amo08g2097 256 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 225 - -
Amo08g2097 256 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Amo08g2097 256 MobiDBLite consensus disorder prediction 227 256 - -
Amo08g2097 256 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Amo08g2097 256 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Amo08g2097 256 MobiDBLite consensus disorder prediction 58 93 - -
Amo08g2097 256 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2097 Amo-Chr8 33768494 33769507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2097 1 223 AP2-EREBP Transcription Factor Family AT5G25390 53.363 2.00e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo08g2097 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2097 - - lang:109326202 236.113