Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2072 ATGGATTCCTCTGATGAACCTTCATCATCACCACTACTTTCTGATTCTTCCAATAATCTCAACAATAATAATGATGATCTAGAATCTTCCAAGAACAAGAACAATGAAGACACTACTACTATTCCCTCCCCTTTTGAATCCTCCAATCCCAGCATCAGCAATGATGTAGAAAATTCATCTCCATCAAAGCATCATCATGATCATGATCTTAATGATGATGATTACTTTCTTGGTGAATCATACACACCAGAGCTTGTTCTGTCACCAGAAACCCAATCAATCTTATTAAGTGGCCTACGTATTGGAGACGATGGTGATGTTCTTGAAGATCTTTGTGATAACAACTTCGAATTTAATGTGGAATCATCACAAGAATGGAGAGATTCCAATTTGTTTGCAGATGAGATTCTAGGAATCGAACCTTCCCTTGATCATTATTGTTCAACCTACCCCACGGGTAATGAAGAGGACATTGACCTTATAGAAACAGTGCAATCTGAAGATGAAGTGAATAATAGAAACCTTGTAATAATTGATGCACCAATTCAGGAAGAGGAAGCACCAAACTTCAAGTTGAAGCCTTTTGGTTTGCATTTGAATAGCATCATAAAATCTACAAAAAGGGTTCAACCTGAGACACATGAAAATGTTGTAGTTGGGAGTAGTAGTAGTAATAATAAAATAAAAAGCATTTTGATCTCACAAGGTAGCAATGGAAAATCAGTAGTAAGAGTTGTTGTTGATGAGACTCAGATCCATCAAGACACCACTTCCAATGATAGTGTTCCCATTTCTCATGATCTTAACAAGAGAATAATCCAAGACAGTAGTGAGAGTAATAATGGTTGTACATGTAAGAAGAGTGCATGCTTGCTCCTGTACTGTGAATGTTTTGCTGCTAAAGGTTATTGTGCAGAATGTTGTACTTGTGAAGGATGCTTAAACAGAGAAGAACATGAAGACAAAGTTAATGATGCTAGGGACAAAATCAAATCTCGTAATCCATTTGCATTTTCTCCTGAGATGGTTCCACAACCCACTCACATTCCATCGGCTAGTAACCAAGAAGAAGAAGATGAAGCAGGCAAAGATACATCAAGAGAATCGAAACCAAGTAAATTCTTCACTTATTTGCCACGTGTCGGTTTAGTAGAATCAAACACCATCAGCACTAATTCTACAAAACATGATGATGATGATGACAACATTTATAAAGAGAAACTTAACCAAACTGGTGGAGGATGCAAAAAACATGCATCAAACACAAGTGATGGTAAAAGAGGATGTACATGTAAGAAGAATAAATGTGTGAACCTTTATTGTGAATGTTTTCGTGCTGAAATCTACTGTTCTGAGGCTTGTGCTTGCGAAGGGTGCTTAAATAGAGAAGAACATTTACACAAAATTAATGAAGCTAAGGAATATATTAAAAGGCGTTATCCATTAGCATTTGCTCCAAGGATTGTTCAAACTCATCTTTCCTCCCCCAATAATACGGATAATGAAAATGTTAAGACAGCATCATCATCATCAGCAGCAGCAAGGCACAAAAGAGGTTGCAGATGCATAAAGTCAAATTGTATGCAGAAGTATTGTGTATGTTTTGAGGTTGAGGTTGGATGCTCCAGTCTTTGTGAATGCAAGGAATGCAAAAATCCATATGGCAAGAACAAAGATTCAGGTCATTAG 1689 0.37 MDSSDEPSSSPLLSDSSNNLNNNNDDLESSKNKNNEDTTTIPSPFESSNPSISNDVENSSPSKHHHDHDLNDDDYFLGESYTPELVLSPETQSILLSGLRIGDDGDVLEDLCDNNFEFNVESSQEWRDSNLFADEILGIEPSLDHYCSTYPTGNEEDIDLIETVQSEDEVNNRNLVIIDAPIQEEEAPNFKLKPFGLHLNSIIKSTKRVQPETHENVVVGSSSSNNKIKSILISQGSNGKSVVRVVVDETQIHQDTTSNDSVPISHDLNKRIIQDSSESNNGCTCKKSACLLLYCECFAAKGYCAECCTCEGCLNREEHEDKVNDARDKIKSRNPFAFSPEMVPQPTHIPSASNQEEEDEAGKDTSRESKPSKFFTYLPRVGLVESNTISTNSTKHDDDDDNIYKEKLNQTGGGCKKHASNTSDGKRGCTCKKNKCVNLYCECFRAEIYCSEACACEGCLNREEHLHKINEAKEYIKRRYPLAFAPRIVQTHLSSPNNTDNENVKTASSSSAAARHKRGCRCIKSNCMQKYCVCFEVEVGCSSLCECKECKNPYGKNKDSGH* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2072 562 Coils Coil 17 37 - -
Amo08g2072 562 ProSiteProfiles CRC domain profile. 425 555 IPR005172 -
Amo08g2072 562 ProSiteProfiles CRC domain profile. 279 342 IPR005172 -
Amo08g2072 562 MobiDBLite consensus disorder prediction 59 75 - -
Amo08g2072 562 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 281 316 IPR005172 -
Amo08g2072 562 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 518 552 IPR005172 -
Amo08g2072 562 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 427 462 IPR005172 -
Amo08g2072 562 SMART CXC_2 424 465 IPR033467 -
Amo08g2072 562 SMART CXC_2 515 556 IPR033467 -
Amo08g2072 562 SMART CXC_2 278 319 IPR033467 -
Amo08g2072 562 MobiDBLite consensus disorder prediction 353 370 - -
Amo08g2072 562 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 70 356 - -
Amo08g2072 562 MobiDBLite consensus disorder prediction 333 370 - -
Amo08g2072 562 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 356 557 - -
Amo08g2072 562 MobiDBLite consensus disorder prediction 1 58 - -
Amo08g2072 562 MobiDBLite consensus disorder prediction 1 76 - -
Amo08g2072 562 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 356 557 IPR044522 GO:0003700
Amo08g2072 562 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 70 356 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2072 Amo-Chr8 33503528 33508060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2072 392 560 CPP Transcription Factor Family AT4G14770 39.655 3.74e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo08g2072 TCR 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2072 K21776 - gmx:547664 182.57