Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo08g2063 | ATGAGAAGGCGTGGAAAGAAGGTATTTGCAAGATTGTGTGGTGGTACCCGTGGTGGTGACGACGAGGAGGACGAAGAAGACACCTTTCCTGACAGCCAAAGGAGGAATCACATTGCGGAGTTTGATTATGAAGGAAGCCAATACAGCCTCGCCGGCCTCCCTCTTCCGTCGCTCGGCTCCACTTCCCACAGACTCAAGCTCCGTCCTTACATTGTTTCTCCCTTCAACTACCATTACAGACTTTGGCAGACATTTCTGGTGTTCTTGGTGTTCTACAATGCATGGGTTTGTCCATTTGAATTTGCATTCCTTAACCAAAAAATGGTCGCAATCTTCGTAGCTGACAATGTTGTCAATGGATTCTTTGCTGTTGACATTGTTCTCACCTTCTTTGTTGCATACCTAGACAAGACTACCTATTTGCTAGTTGATGATAAAAGCCTAATTGCTTTGAGATATGCCAAATCATGGTTGGCTTTAGATGTCATCTCCACTATCCCCTCTGAAGTTGCTCATAGGTTTTTGCCCGCTGCCCTGAAAAAATATGCTTACTTCAACATGCTTCGCCTTTGGCGTCTTCGCCGAGTCAGTGCCTTGTTTGCAAGATTAGAGAAGGACAGGCATTATAATTACTTCTGGGTTCGCTGCTCAAAACTGATCTGTGTTACATTATTCGCAGCTCATTTTGCTGCTTGTATTTTCCATTTTATCACTCTGAATCGTGAAACCGGACAAACATGGCTTTCGCTTCTTCCGGAAGTCGATGATCATGGTGTCATATCTCTCTATATAGCATCAATTTACTGGTCCATATCAACTCTTACAACGGTTGGTTATGGAGATCTACATCCTACGAACACAAGGGAGACTCTTTTTGATACTTTCTATATGCTCTTCAATCTTGGGCTAACTGCATATCTCATAGGTAACATGACAAATTTGGTCGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACAATTCAAGCTGTGACAAGTTTTGCCAAACGGAATAAATTGCCTGTTCTCATGCAAGAACAGATGATTGCACATTTGCATATGAAGTACAGAACTGATATAGAAGGGCTGCAGCAGCAAGAGATTATCGAATTACTCCCGAAAGCTATTCGTTCTAGCATCTCTCATTACCTATTCTATGAAATTTTGGAGGATATCTACTTGTTTAATGGGGTGTCACATGATCTGCTATTTCAACTGGTCTCAGAGATGAAGCCCGAGTATTTTCCTCCAAAAGAAGATGTGATTTTGCAGAATGAAGCACCAACAGACTTCTATGTATTGGTCACTGGTGCTGTGGAAGTTATTCTCAAAGGACAGAATAGAACTGAACAGGTAGTTGGTGAGATAAAGGCAGGAGAATTAGTTGGAGAAGTCGGAGTTTTATGTTACAGGCCCCAGATGTTTACAGTTCGGACCAAACGATTGTGCCAACTTCTGCGCTTGAGCCGGACTACATTTATAAATCTTGCTCACTCCAATGTTGGAGATGGGACAATTATGATGAACAATTTTCTCAAGCATTTGCATGAATCCCAGGCACCAGGGATGGATATAATTTTCCGAGAGACAGAGGCCATGCTGGCACGTGGTAAATTGGATTTGCCTATCAGCACATGCTTTGCAGTAAACCGAAATGATGATATATTGTTGCAACGGCTGCTGAAGAAGGGTATGGATCCAAATGAAGGCGACCCAGATGGAAGGACACCGCTGCATATTGCAGCTTCTAAAGGCAATGAGAAGTGTATATCTGTGCTTCTGGAATATGATGCTGATCCCAACATCAGAGATAAGGAAGGAAATCTTCCACTGTTTGAAGCACTTATAAGTGGTAACGACTCCATTGTGAAACTCCTTCTGGAGCATGGTGCAGTATTAGAACCTGCCGATGCAGGCCACCTGGCATGCATTGCTGTTGAGAAAAATAGCATGGAACTGCTCAAAAGAATTTGTCAATATGGTTGGGATGTGACACAACCCACACACAATGGAACCACTGCTCTTCACACTGCAGTGTGTGAAGGAAACCTCCAAATGACAAAGTTCCTTGTCGAAAAAGGAGCCAACATTGATCTGCAAGACGCTACCGGCTGGACTCCGAGGACCTTGGCGGATCAACAAGACCATGATGAAATCAAATGTATGTTTCAGAAGATTGGAGAGAGCACAGGTCCAATTCCTGCTGCTATTCCACCATCAAATCGCAAGCACTTGCCTAACCTTGGAAGGTACCAAAGTGAACCAACTATGCGTAGTATTCCCCAAACAAACATTGGACAGTTCCGCTCGCCACGCAATCCAGAAGATATGTTCTTTGACAATACTAAAAGAAGAAGAAACAACAATTTTAACAATTCCATTTTTGGGATGATGTCGGCAGCTAACCATAATCAAAGAGAGCGTGAGGCATCCAAAAAATTTAACAATAATAGGTGGAACAAGGATGACTTTGTTGGCAGAGTGACAATAAGTTGTCCTGAAAAGGGTGAACATGCTGGAAAGCTTGTTATGCTGCCAAATACCATTCAGGAACTGCTAGATATTGGAGCTAAAACGTTTGACTTTACTGCTGTCAAAATTTTGACCAAAGAAGGAGCTGAAGTGGATGATATAAATCTTATAAGAGATGGTGATCATCTTATTATTGCACATACATGA | 2682 | 0.4251 | MRRRGKKVFARLCGGTRGGDDEEDEEDTFPDSQRRNHIAEFDYEGSQYSLAGLPLPSLGSTSHRLKLRPYIVSPFNYHYRLWQTFLVFLVFYNAWVCPFEFAFLNQKMVAIFVADNVVNGFFAVDIVLTFFVAYLDKTTYLLVDDKSLIALRYAKSWLALDVISTIPSEVAHRFLPAALKKYAYFNMLRLWRLRRVSALFARLEKDRHYNYFWVRCSKLICVTLFAAHFAACIFHFITLNRETGQTWLSLLPEVDDHGVISLYIASIYWSISTLTTVGYGDLHPTNTRETLFDTFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKYRDTIQAVTSFAKRNKLPVLMQEQMIAHLHMKYRTDIEGLQQQEIIELLPKAIRSSISHYLFYEILEDIYLFNGVSHDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYVLVTGAVEVILKGQNRTEQVVGEIKAGELVGEVGVLCYRPQMFTVRTKRLCQLLRLSRTTFINLAHSNVGDGTIMMNNFLKHLHESQAPGMDIIFRETEAMLARGKLDLPISTCFAVNRNDDILLQRLLKKGMDPNEGDPDGRTPLHIAASKGNEKCISVLLEYDADPNIRDKEGNLPLFEALISGNDSIVKLLLEHGAVLEPADAGHLACIAVEKNSMELLKRICQYGWDVTQPTHNGTTALHTAVCEGNLQMTKFLVEKGANIDLQDATGWTPRTLADQQDHDEIKCMFQKIGESTGPIPAAIPPSNRKHLPNLGRYQSEPTMRSIPQTNIGQFRSPRNPEDMFFDNTKRRRNNNFNNSIFGMMSAANHNQREREASKKFNNNRWNKDDFVGRVTISCPEKGEHAGKLVMLPNTIQELLDIGAKTFDFTAVKILTKEGAEVDDINLIRDGDHLIIAHT* | 894 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo08g2063 | 893 | Coils | Coil | 890 | 893 | - | - | |
| Amo08g2063 | 893 | SUPERFAMILY | Voltage-gated potassium channels | 74 | 316 | - | - | |
| Amo08g2063 | 893 | PANTHER | INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT | 30 | 892 | - | - | |
| Amo08g2063 | 893 | PRINTS | EAG/ELK/ERG potassium channel family signature | 115 | 125 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Amo08g2063 | 893 | PRINTS | EAG/ELK/ERG potassium channel family signature | 126 | 135 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Amo08g2063 | 893 | PRINTS | EAG/ELK/ERG potassium channel family signature | 263 | 280 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Amo08g2063 | 893 | PRINTS | EAG/ELK/ERG potassium channel family signature | 307 | 316 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Amo08g2063 | 893 | Gene3D | Helix hairpin bin | 318 | 384 | - | - | |
| Amo08g2063 | 893 | ProSiteProfiles | KHA domain profile. | 828 | 893 | IPR021789 | - | |
| Amo08g2063 | 893 | ProSiteProfiles | Ankyrin repeat region circular profile. | 607 | 632 | - | - | |
| Amo08g2063 | 893 | PRINTS | Ankyrin repeat signature | 575 | 590 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | PRINTS | Ankyrin repeat signature | 687 | 701 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | PANTHER | POTASSIUM CHANNEL AKT1 | 30 | 892 | IPR045319 | GO:0005249|GO:0006813 | |
| Amo08g2063 | 893 | ProSiteProfiles | Ankyrin repeat profile. | 574 | 606 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | ProSiteProfiles | Ankyrin repeat profile. | 671 | 703 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | Gene3D | - | 543 | 726 | IPR036770 | - | |
| Amo08g2063 | 893 | Gene3D | - | 80 | 316 | - | - | |
| Amo08g2063 | 893 | SUPERFAMILY | Ankyrin repeat | 548 | 727 | IPR036770 | - | |
| Amo08g2063 | 893 | ProSiteProfiles | Ankyrin repeat profile. | 607 | 639 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | Pfam | Ankyrin repeats (3 copies) | 645 | 717 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | Pfam | Ankyrin repeats (3 copies) | 548 | 633 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | ProSiteProfiles | Ankyrin repeat region circular profile. | 574 | 606 | - | - | |
| Amo08g2063 | 893 | CDD | CAP_ED | 395 | 509 | IPR000595 | - | |
| Amo08g2063 | 893 | Gene3D | Jelly Rolls | 386 | 531 | IPR014710 | - | |
| Amo08g2063 | 893 | SMART | ANK_2a | 849 | 878 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | SMART | ANK_2a | 574 | 603 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | SMART | ANK_2a | 671 | 700 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | SMART | ANK_2a | 638 | 667 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | SMART | ANK_2a | 607 | 636 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | SMART | ANK_2a | 541 | 570 | IPR002110 | GO:0005515 | |
| Amo08g2063 | 893 | Pfam | Ion transport protein | 80 | 322 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Amo08g2063 | 893 | Pfam | KHA, dimerisation domain of potassium ion channel | 828 | 890 | IPR021789 | - | |
| Amo08g2063 | 893 | ProSiteProfiles | Ankyrin repeat region circular profile. | 671 | 702 | - | - | |
| Amo08g2063 | 893 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 395 | 515 | IPR000595 | - | |
| Amo08g2063 | 893 | SUPERFAMILY | cAMP-binding domain-like | 320 | 516 | IPR018490 | - | |
| Amo08g2063 | 893 | Pfam | Cyclic nucleotide-binding domain | 414 | 500 | IPR000595 | - | |
| Amo08g2063 | 893 | MobiDBLite | consensus disorder prediction | 763 | 785 | - | - | |
| Amo08g2063 | 893 | SMART | cnmp_10 | 395 | 513 | IPR000595 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo08g2063 | Amo-Chr8 | 33383172 | 33389051 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo08g2063 | 23 | 891 | Ion Channels | AT2G25600 | 55.040 | 0.0 | 941 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo08g2063 | K21867 | - | gmx:100802964 | 1118.99 |