Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2056 ATGGAGAATGATGAACTAAGAGTGGCGAGCGCACGCATAGGAAGCTCGAGTATATGGAGAGGCAGTGGTGCTGTTGATGTGTTCTCAGGCTCTTCGAGGAGAGACGACGATGAAGAACAGCTCAAATGGGCGGCCATCGAGAAGCTTCCAACGTATCTACGCTTAACAAGAGGAATACTAACCGAATCACAAGGCGAATACACTGAGATCGATATCAACAAACTTGGTCCCTTGCAGAGAAAGAATTTGGTAGAGAGGCTAGTCAAGATTGCTGAACAGGACAATGAAAAGTTCTTGTTGAAATTGAGAAGGAGAATCGATAGAGTTGGACTTGATATTCCGACAATTGAAGTCCGATTCGAGCATTTGAATGTTGAAGCTGAGGCTCATGTTGGAAGCAGGGCATTGCCAACAAACCTTAACTTCTGCATTAATTTGTTAGAGGGGTTCCTGAATTCTCTTTGCCTTCTTCCGAGTCGAAAGAAGCCATTCACGGTTCTTCATGATGTTAGTGGAATCATCAAGCCTAGAAGAATGACACTGCTCTTAGGCCCTCCAAGCTCTGGAAAGACCACGCTGTTGCTGGCACTGGCCGGAAGACTCGGTAAAGATCTTAAGTTTTCTGGGAGAGTTTCCTACAACGGTCATGGAATGGAGGAATTTGTGCCTCAGAGAACATCAGCTTACATAAGTCAAACTGATCTCCACATAGGGGAACTGACAGTCAGAGAAACGTTGGCCTTTTCAGCAAGGTGTCAAGGGATCGGAATGCGTTACGATATGCTGGCAGAATTATCAAGAAGAGAGAAGGCAGAAAACATTAAGCCAGATCCTGATCTAGATATTTATATGAAGGCTGCAGCACTGGAAGGCCAAGAAACGAATGTAGTTACAGATTATATAATGAAGATTTTGGGTCTAGAAGTATGTGCTGACACCATGGTAGGGGATGAAATGATTAGGGGTATTTCTGGTGGACAGAAAAAGCGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGGGCACTTTTCATGGATGAAATATCAACTGGTTTGGATACTTCTACAACATTCCAAATGGTTAATTCTTTGAGACAATCCATTCACATTTTGAATGGAACTGCTGTAATATCTCTTCTCCAACCAGCACCAGAAACTTATGAACTATTTGATGATGTAATTCTCCTATCAGATGGACAAATTGTGTATCAGGGTCCAAGAGAAAATGTTCTTGAGTTCTTTGAATACATGGGATTCAAATGTCCAGAAAGAAAAGGAGTAGCAGATTTCCTGCAAGAGGTAACATCAAGAAAAGATCAAGAGCAGTACTGGGCAAACAAAGATGAGCCTTATACCTTTATCTCTGTAAGAGAATTTGCAGAAGCATTTCAGTCATTTCACATAGGCCGAAAACTCGGCGACGAGCTCGCTACCCCGTTCGACAAGACCAAAGGCCACCCTGCTGTTCTAACCAAGAACAAGTATGGTGTTAGCAAGAAGGAATTGCTAAGAGCTTGTGTTTCAAGAGAATTCTTGCTCATGAAAAGGAACTCCTTTGTCTACATTTTCAAGATGTGGCAATTGATTCTAACAGGACTCATAACAATGACATTGTTCTTGAGAACTGAGATGCATCGGAACACAGTATCTGATGGCGGGATCTACATGGGGGCTTTATTCTTTGTTCTGATTGTGATAATGTTCAATGGATTCTCTGAGTTATCCATGACCATTGCAAAGCTCCCTGTTTTCTACAAGCAAAGGGACCTTCTATTCTATCCTTCTTGGGCATACTCTTTGCCAACATGGATCCTTAAGATTCCTATCACTTTGGTAGAAGTTGGTATTTGGGTTGTCATGACTTACTATGTTATAGGCTTTGATCCAAGTTTTGAAAGGTTCATCAAGCAGTATTTTCTGCTAGCTTGCATCAACCAGATGGCCTCTGCACTTTTTCGATTTATGGGGGCAGTTGGGAGGAACCTAATTGTGGCCAACACATTTGGATCATTTGCTTTACTTGCAGTTATGGTCATGGGTGGATTCATCCTATCTAGAGTTGATGTGAGGAAGTGGTGGTTATGGGGCTACTGGATCTCTCCCATGATGTACGGACAGAATGCTATAGCTGTGAATGAATTCCTGGGAAACAGTTGGAAACATGTTCCACCTAATTCAACAGAACCATTGGGTGTTAAGGTCTTAAAAGCACGTGGAATATTCCCTGAAGCACATTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTACTCTTCAATTTGCTTTTCCCTTTGGCCTTGCATTTTCTTGATCCATTTGGCAAACCACAAGCATTGATATCAGAAGAAGCTTTAGCTGAAAGGAATTCTGTTAGGAATGATCACATCATTGAACTTTCTTCTGGAAGGAYTGGAGCTTCTGATAAAAGTAATGGAAGAAGTGTGTCATCAAGAACCTTYTCTGCAAGAGTTGGTGCTSTTAATGGAACTGATCGCAACAGAAAGCGTGGGATGGTTCTTCCTTTCACYCCTCTTTCTATCACTTTTGATGAAATCAGATATACACTAGACATGCCACAGGAAATGAAGGCCCAAGGCATAGTTGAAGATAAACTTGAACTGTTGAAGGGTATTAGTGGAGCTTTTAGACCAGGAGTTCTAACAGCTCTAATGGGTGTAAGTGGAGCTGGTAAAACCACTCTAATGGATGTGTTATCTGGGAGGAAAACTGCAGGATATATTCAAGGCCAAATCACCATATCAGGGTACCCTAAGAAGCAAGAAACATTCGCTCGCATATCCGGATATTGTGAGCAAACTGACATACACTCTCCCCATGTCACAGTCTATGAGTCACTTGTTTATTCTGCATGGCTAAGGTTACCCCCTGAGGTTGATTCTTCCACAAGAGAGATGTTCATTGAGGAAGTTATGGAGCTAGTAGAGCTGAATTCATTGAAAGATGCATTGGTTGGATTACCTGGAGTGAATGGTCTGTCCACAGAGCAGCGCAAGAGGCTAACTATTGCGGTCGAACTGGTTGCAAATCCATCAATAATATTCATGGATGAACCTACCTCTGGCCTTGATGCCAGGGCTGCTGCTATAGTTATGAGGACAGTGAGGAACACAGTCAACACAGGCCGAACCGTGGTGTGCACAATCCACCAGCCTAGCATTGATATATTTGATGCTTTCGATGAGTTACTTCTCTTGAAGCGTGGAGGTGAAGAGATATATGTGGGGCCATTAGGCCGCCATTCTTCTCACCTTATCAGTTACTTTGAGGGAATTAATGGAGTGCCAAAGATCAAGAATGGTTATAATCCTGCAACTTGGATGTTGGAGGTTACTTCAGAAGCACAAGAGGAAGCTCTAGGAATTAACTTTGCTGAACTATACAAGAATTCTGATCTATACAGGGGAAACAAGGCACTGATAAGTGAACTAAGTACACCCCCATCAGCTTCTAAGGACTTATACTTCACTACAAAGTACTCACAGTCGTTCATAACCCAATGTAAAGCTTGTCTTTGGAAACAAAACCTATCATATTGGAGAAACCCTCCATACAGTGCAGTGAGATTCTTATTCACAACATTTATCGCCTTGCTGTTTGGGACAATTTTTTGGGATATTGGCTCCAAAAGGAAAAGAGCACAAGATGTATTTAACGCCATGGGATCCATGTATGCTGCAGTACTCTTCATTGGGGTACAAAATGCTACCTCCGTTCAACCTGTTGTGGCCATTGAGAGAACAGTCTTTTACAGAGAAAAAGCTGCTGGGATGTACTCAGCTTTGCCATATGCATTTGGACAGGTTGCCATTGAGATCCCGTACATATTGCTACAGACCCTGGTATATGGTGTTATAGTGTATGCCATGATTGGGTTTGAGTGGACAGTTATGAAGTTCTTTTGGTATCTGTTCTTCATGTTCTTTACATTTTTATACTTCACCTTATATGGGATGATGGCTGTTGGTGCTACCCCAGATCACCATGTTGCTGGCATAGTTTCTTTTGGGTTCTACTTGATATGGAACCTTTTCTCAGGATTTGTCATTCCTAGAACTAGAATGCCAGTGTGGTGGAGATGGTACTTTTGGATTTGTCCTGTGTCATGGACCATGTATGGATTAGTCACTTCACAGTTTGGTGATGTAACTGAACGCATAGACACTGGAGAAACTGTGGGAGATTTTGTYAAGAGATATTTTGGATATAGAGATGATTTCATTGGTATAGCTGCTGCTGTGGTTGTTGGCTTCGCATTGCTCTTTGGATTTACCTTTGCCTTTTCAATTAAGGCATTTAATTTCCAAAAGAGATGA 4344 0.421 MENDELRVASARIGSSSIWRGSGAVDVFSGSSRRDDDEEQLKWAAIEKLPTYLRLTRGILTESQGEYTEIDINKLGPLQRKNLVERLVKIAEQDNEKFLLKLRRRIDRVGLDIPTIEVRFEHLNVEAEAHVGSRALPTNLNFCINLLEGFLNSLCLLPSRKKPFTVLHDVSGIIKPRRMTLLLGPPSSGKTTLLLALAGRLGKDLKFSGRVSYNGHGMEEFVPQRTSAYISQTDLHIGELTVRETLAFSARCQGIGMRYDMLAELSRREKAENIKPDPDLDIYMKAAALEGQETNVVTDYIMKILGLEVCADTMVGDEMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDTSTTFQMVNSLRQSIHILNGTAVISLLQPAPETYELFDDVILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYTFISVREFAEAFQSFHIGRKLGDELATPFDKTKGHPAVLTKNKYGVSKKELLRACVSREFLLMKRNSFVYIFKMWQLILTGLITMTLFLRTEMHRNTVSDGGIYMGALFFVLIVIMFNGFSELSMTIAKLPVFYKQRDLLFYPSWAYSLPTWILKIPITLVEVGIWVVMTYYVIGFDPSFERFIKQYFLLACINQMASALFRFMGAVGRNLIVANTFGSFALLAVMVMGGFILSRVDVRKWWLWGYWISPMMYGQNAIAVNEFLGNSWKHVPPNSTEPLGVKVLKARGIFPEAHWYWIGVGASIGYMLLFNLLFPLALHFLDPFGKPQALISEEALAERNSVRNDHIIELSSGRXGASDKSNGRSVSSRTFSARVGAXNGTDRNRKRGMVLPFTPLSITFDEIRYTLDMPQEMKAQGIVEDKLELLKGISGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTAGYIQGQITISGYPKKQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSSTREMFIEEVMELVELNSLKDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGRHSSHLISYFEGINGVPKIKNGYNPATWMLEVTSEAQEEALGINFAELYKNSDLYRGNKALISELSTPPSASKDLYFTTKYSQSFITQCKACLWKQNLSYWRNPPYSAVRFLFTTFIALLFGTIFWDIGSKRKRAQDVFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYREKAAGMYSALPYAFGQVAIEIPYILLQTLVYGVIVYAMIGFEWTVMKFFWYLFFMFFTFLYFTLYGMMAVGATPDHHVAGIVSFGFYLIWNLFSGFVIPRTRMPVWWRWYFWICPVSWTMYGLVTSQFGDVTERIDTGETVGDFVKRYFGYRDDFIGIAAAVVVGFALLFGFTFAFSIKAFNFQKR* 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2056 1447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 424 IPR027417 -
Amo08g2056 1447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 873 1086 IPR027417 -
Amo08g2056 1447 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Amo08g2056 1447 Pfam ABC-2 type transporter 1175 1389 IPR013525 GO:0016020|GO:0140359
Amo08g2056 1447 Gene3D - 155 460 IPR027417 -
Amo08g2056 1447 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 850 1102 IPR003439 GO:0005524
Amo08g2056 1447 SMART AAA_5 176 408 IPR003593 -
Amo08g2056 1447 SMART AAA_5 887 1079 IPR003593 -
Amo08g2056 1447 Pfam ABC transporter 878 1030 IPR003439 GO:0005524
Amo08g2056 1447 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Amo08g2056 1447 Pfam ABC-2 type transporter 382 434 IPR043926 GO:0140359
Amo08g2056 1447 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 10 1447 - -
Amo08g2056 1447 Pfam Plant PDR ABC transporter associated 720 783 IPR013581 -
Amo08g2056 1447 Pfam ABC-transporter N-terminal 91 142 IPR029481 -
Amo08g2056 1447 Gene3D - 866 1092 IPR027417 -
Amo08g2056 1447 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1447 - -
Amo08g2056 1447 CDD ABCG_PDR_domain2 847 1085 IPR034003 -
Amo08g2056 1447 Pfam ABC transporter 167 349 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2056 Amo-Chr8 33260757 33270213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2056 888 1104 Calmodulin-binding Proteins AT2G36910 25.000 1.13e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2056 K08711 - gmx:100804030 2541.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2056 08 33260757 33270213 Amo18g3395 18 136118388 136128667 hybridization
Amo06g2894 06 94530551 94539597 Amo08g2056 08 33260757 33270213 PCT