Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2041 CTATCAGCAAGAAGAGTTAATAAGAAGAAAAACACAAAGCTGGCATCAAATGTCTCATTTGAAGTTTCAACATCACAAGGGGATGTTAGAGCAAAGTTAACTAAAGAAGTATCCACAATAAGGGTGGTAGAATCACATGACACCACTGGTGAACATTGTATGTCCAATAGCATAAGAGAACATGGTATCACAGACAACGTGCTTTCGGTGCAAGACACTGCGAAATCTGATGGTCCGAGCTCTCCAAATAAAGACATAGATATGATTTGTGAGAAACTAGGAGCATCAGATTGCTTGGCCATTGTGGACATTGATTCCGAGATAAAGGATCCTGAAGTTTGGAGTTCTTATGCACCTGAAATATACAATAATATTCGTGTCACAGAGCTCTCAAGGAGACCAATATCGAATTACATGGGAGAGTTGCAGCAAGATATCAGTCCTACCATGAGGGGAATTTTGATTGATTGGCTTGTGGAGGTTACCGAGGAATATAACTTGGTTCCAGACACACTTTACCTTACAGTAAACCTCATTGATAGGTATCTCTCAGCAAAATTGATGCAGAAACAAAGACTCCAGTTGCTTGGTGTTACTTGCATGCTCATTGCATCAAAGTATGAAGAGATTTGTGCTCCTAGAGTGGAGGAATTTTGCTTCATCACAGATAACACTTACACAAAAGAAGAGGTATTGAAAATGGAGAGTGAAGTTCTAAACATTTTGCATTTTCATTTATCTGTTCCAACAACCAAAACATTTCTGAGGAGATTCATCCAAGCGGCACAATCTTCATACAAGGTCCCTCACATTGAATTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACCCTTGTTGAGTACAGTTTCTTGCAGTTTCTACCTTCCCTTATAGCTGCATCTGCTGTGTTCCTTGCAAGATGGACTTTAAACCAATCAGAACATCCATGGAATCTAACTCTGGAGTACTATACAAACTACAAAGCCTCAGAGCTTGAAACTGTTGTTCTTGCACTTGTAGATTTGCAGCTCAACACCAAAGCCAGTTCCTTGAATGCTATACGTGAAAAGTATAAACAACATAAGGAAATTAACGATGTACCTATGGAAGATGGATTTTGTATGACAAAAGTATCCAAATTCTAA 1146 0.3892 LSARRVNKKKNTKLASNVSFEVSTSQGDVRAKLTKEVSTIRVVESHDTTGEHCMSNSIREHGITDNVLSVQDTAKSDGPSSPNKDIDMICEKLGASDCLAIVDIDSEIKDPEVWSSYAPEIYNNIRVTELSRRPISNYMGELQQDISPTMRGILIDWLVEVTEEYNLVPDTLYLTVNLIDRYLSAKLMQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKEEVLKMESEVLNILHFHLSVPTTKTFLRRFIQAAQSSYKVPHIELEFLANYLAELTLVEYSFLQFLPSLIAASAVFLARWTLNQSEHPWNLTLEYYTNYKASELETVVLALVDLQLNTKASSLNAIREKYKQHKEINDVPMEDGFCMTKVSKF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2041 381 PIRSF Cyclin_A_B_D_E 1 371 IPR039361 -
Amo08g2041 381 Pfam Cyclin, N-terminal domain 120 246 IPR006671 -
Amo08g2041 381 PANTHER CYCLINS 15 362 IPR039361 -
Amo08g2041 381 CDD CYCLIN 247 340 IPR013763 -
Amo08g2041 381 SUPERFAMILY Cyclin-like 110 246 IPR036915 -
Amo08g2041 381 Gene3D - 134 247 - -
Amo08g2041 381 PANTHER CYCLIN-A2-4 15 362 - -
Amo08g2041 381 ProSitePatterns Cyclins signature. 151 182 IPR006671 -
Amo08g2041 381 SMART cyclin_7 156 240 IPR013763 -
Amo08g2041 381 SMART cyclin_7 253 341 IPR013763 -
Amo08g2041 381 SMART Cyclin_C_2 249 370 IPR004367 -
Amo08g2041 381 SUPERFAMILY Cyclin-like 248 362 IPR036915 -
Amo08g2041 381 Pfam Cyclin, C-terminal domain 249 362 IPR004367 -
Amo08g2041 381 Gene3D - 120 362 - -
Amo08g2041 381 CDD CYCLIN 150 239 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2041 Amo-Chr8 32915598 32923422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2041 77 362 Core Cell Cycle Gene Families AT5G25380 66.899 9.50e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2041 K06627 - gmx:547780 528.865