Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2033 ATGCACRCGCACTCGTCGATTCGGGATCGCACGCACGAATTCCATACCATCGCCGAGAGGTTGAAGAAATCTTCTTCCTCAAACGGACCCACAACCACTTCCTCYTCATCTGCTGCTTCTTCTTCTTCCAGATCGGATGAACAGCGATCCGCAATCGCAATTCAGTCCGAGTTCAATCGAAGGGCTTCCAAGATTGGCTATGGGATCCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCCAAGTTGGCGAAGAGGACTTCGGTTTTTGATGACCCTACAATGGAAATCCAAGAGCTTACGAGTGTAATCAAGCAAGACATTACTGCGTTGAACTCTGCAGTTGTGGATCTTCAGTTGCTATGCAACTCGAGGAATGAGAGCGGGAACGTTTCTGCCGACACTACCAGCCATTCAACTACGGTTGTAGATGACCTCAAGACCCGTTTGATGAGCACCACCAAGGAGTTCAAAGAAGTTCTCACCATGAGAACCGAGAACTTGAAAGTACATGAGAATAGGAGACAATTGTTTTCGGCCTCTGGTTCTAAGGATGCTGCTAATCCTTTTGTCCGTCAACGGCCATTAGCTACAAGGACGGCTGCTAGTGCTTCTAATGCCCCCGCACCTCCATGGGCTAGTGGGTCTTCATCTTCATCTGAGTTGTTTCCTAAGAAGCAGGCAGATGGGGAGAGTCAGCCATTGCTACAGCAACAGCAACAACAACAGCAGCARATGGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCATAATGTTGAATCCACYATTCATGAACTCAGCAATATYTTTAATCAATTAGCAACTCTCGTTTCCCAACAAGGAGAGCTTGCTATCAGAATTGATGAGAACATGGACGATACATTGGCAAACGTAGAAGGTGCACAAGGGGCTCTGTTGAAGTATCTGAACAGCATATCTTCTAATAGAAATGAAAACAAGGACACAAGTGACGGCCTTATTACTGGTGATGAGCCTTTTGTATCCCATTAA 1023 0.4643 MHXHSSIRDRTHEFHTIAERLKKSSSSNGPTTTSSSSAASSSSRSDEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLCNSRNESGNVSADTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSASGSKDAANPFVRQRPLATRTAASASNAPAPPWASGSSSSSELFPKKQADGESQPLLQQQQQQQQQMVPLQDSYMQSRAEALHNVESTIHELSNIFNQLATLVSQQGELAIRIDENMDDTLANVEGAQGALLKYLNSISSNRNENKDTSDGLITGDEPFVSH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2033 340 MobiDBLite consensus disorder prediction 1 20 - -
Amo08g2033 340 MobiDBLite consensus disorder prediction 174 253 - -
Amo08g2033 340 Pfam SNARE domain 287 320 IPR000727 -
Amo08g2033 340 Gene3D - 53 305 - -
Amo08g2033 340 SUPERFAMILY t-snare proteins 56 305 IPR010989 GO:0016020|GO:0016192
Amo08g2033 340 PANTHER SYNTAXIN-32-LIKE 6 322 - -
Amo08g2033 340 PANTHER SYNTAXIN 6 322 IPR045242 -
Amo08g2033 340 CDD SNARE_syntaxin5 253 320 - -
Amo08g2033 340 SMART tSNARE_6 245 312 IPR000727 -
Amo08g2033 340 MobiDBLite consensus disorder prediction 318 340 - -
Amo08g2033 340 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 250 312 IPR000727 -
Amo08g2033 340 MobiDBLite consensus disorder prediction 1 54 - -
Amo08g2033 340 MobiDBLite consensus disorder prediction 197 253 - -
Amo08g2033 340 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 23 IPR021538 -
Amo08g2033 340 ProSitePatterns Syntaxin / epimorphin family signature. 256 295 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo08g2033 340 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2033 Amo-Chr8 32782856 32787048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2033 2 320 SNARE and Associated Proteins AT3G24350 62.941 3.86e-128 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2033 K08490 - gmx:100777961 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2033 08 32782856 32787048 Amo18g3348 18 135011638 135016333 hybridization