Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2028 ATGTGTCACATCCCAGCTATCCCTATCTTTGAGCAGTCGGTGGTTGTTGCGTCACATCCATCATCAGTATGTATAGTCCAGTCATGTATTCTGAGCCTTTTTATACAGTGGTTTGCATATGTTGTTATGGAGGAGGCGATAATAATGTACTCATCCGAGGGAAAAGTGTACAATCTGTCATCAAACACAGAAAGCATGCACGGAGAAGAATTGGTTCAATCAAAAGAACATGAAAAGATCAATGACTTGCAAGAGAGAAGATATATGAAATACGGATGTCAACATTATCGGAGAAGATGTCGTATTAGGGCCCCCTGCTGCAATGAGATTTTTCACTGTCGCCATTGTCATAATGAGGCAAAGGATGATATCAAGATTGATCCAAAGCTTAGACATGACCTTTCCCGTCATCAAATTAAACAGGTGATATGTTTACTTTGCGGGACTGAACAAGAGGTTCAGCAAAACTGCATTAGTTGTGGAGTTTGTATGGGGAAGTACTTTTGCGGGATATGCAAGCTTTTTGATGACGATGTATCTAAGAAACAATACCATTGCGGCGGCTGTGGAATTTGCAGAACTGGAGGATCTGAAAATTTCTTCCACTGCGACAAGTGTGGTTGTTGCCAGTCTACTCTGCTGAAAAATAGTCACGCTTGTGTGGAGAAGGCAATGCATCATGATTGTCCTGTTTGTTTTGAGTATTTGTTCGAATCGATGGATGAAATCGCTGTCTTGCCATGTGGACATACAATCCATATCAACTGTATGAATGAAATGAGAAAGCATTTACAGTATGCATGCCCTCTTTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACAATATCAAAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGTAGAAGTGGTAACGTAAAGTACCATGTTATTGCTCAAAAGTGCTTGAATTGCAACTCCTACAACACAAGACAAACTTGA 1011 0.4036 MCHIPAIPIFEQSVVVASHPSSVCIVQSCILSLFIQWFAYVVMEEAIIMYSSEGKVYNLSSNTESMHGEELVQSKEHEKINDLQERRYMKYGCQHYRRRCRIRAPCCNEIFHCRHCHNEAKDDIKIDPKLRHDLSRHQIKQVICLLCGTEQEVQQNCISCGVCMGKYFCGICKLFDDDVSKKQYHCGGCGICRTGGSENFFHCDKCGCCQSTLLKNSHACVEKAMHHDCPVCFEYLFESMDEIAVLPCGHTIHINCMNEMRKHLQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEQYQNKMVWILCNDCGRSGNVKYHVIAQKCLNCNSYNTRQT* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2028 336 Pfam Zinc-ribbon 276 334 IPR039512 -
Amo08g2028 336 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 57 336 - -
Amo08g2028 336 Gene3D - 300 336 - -
Amo08g2028 336 SUPERFAMILY CHY zinc finger-like 90 164 IPR037274 GO:0008270
Amo08g2028 336 Pfam Ring finger domain 228 271 IPR001841 -
Amo08g2028 336 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 57 336 - -
Amo08g2028 336 ProSiteProfiles Zinc finger CHY-type profile. 86 162 IPR008913 GO:0008270
Amo08g2028 336 SUPERFAMILY Zinc hairpin stack 165 222 IPR037275 -
Amo08g2028 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 274 IPR013083 -
Amo08g2028 336 SUPERFAMILY RING/U-box 228 277 - -
Amo08g2028 336 ProSiteProfiles Zinc finger CTCHY-type profile. 164 228 IPR017921 -
Amo08g2028 336 Pfam CHY zinc finger 93 174 IPR008913 GO:0008270
Amo08g2028 336 ProSiteProfiles Zinc finger RING-type profile. 229 272 IPR001841 -
Amo08g2028 336 SMART ring_2 229 271 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2028 Amo-Chr8 32713928 32720628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2028 91 334 C2H2 Transcription Factor Family AT3G18290 40.800 4.59e-57 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2028 K10144 - gmx:100803569 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g3016 06 96652046 96655224 Amo08g2028 08 32713928 32720628 PCT
Amo08g2028 08 32713928 32720628 Amo16g3618 16 146724028 146727290 PCT