Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2020 ATGGAGGACCAAGCGAATCAGAACCAAAGCCAAGGTCCTCCACCGCCGCAGCCTCCACCACTTCCGGCGCCGGAATCTGAACCACCGGTGGAGGAGGAGGAAGAGGATGAAGAAGACGATTCCAAGAAAGAGGAGGAGGAACTTGTCGCCAAGGTTAACAGGCTCATGGAGAAGATTATTTCTGCGCCCGATAACCCTAAGCCCGCGGTTCTCCACGCCCTGGCCTCTATCCTCGAAACGCAAGAGTCACGATACATGGAAGAGAATGGTTATTCTTCTTCAAGTAATGCCCGTGCTGCCCATAACATTGGGCGCCTTGGGAGCTTAATTCGGGAAAATGACGAGTTCTTTGAGTTGATATCTTCGAAGTTTCTGGCAGAATCGACGTACTCAACTGCCGTTCAAGCTGCCACTTGTAGACTTCTCTTATGCTGTTCACTGACTTGGATTTATCCTCATGTTTTTGACGAACCTGTACTGGACTGCATCAAAGAGTGGGTGCTGGATGATAATGGTAGACTATCTGCTGAAGAACAAAATCTGAAGCATAACTCAGGGAGAAGGGATGCCTCAGATTCTGAAATGTTGAAAACCTATTCAACAGGAGTTCTTGCTGTGTGTTTGGTTAGCGGAGGTCAAGTTGTGGAGGATGTATTGACATCTGGATTGTCAGCTAAGCTCATGCGTTATCTCCGTCTGCGTGTGCTTGGTGAGACAAGTAGCAGCCAGAAAGAAATTACTCATGCAACAGATAGTAGGCATGCATCAGGGAATAGTTCAGTCAGAGTTAGAGATGATGGTCGTGGAAGATTTCGCCAGCTCTTGGAACCTTGTCATTTAGATGATTCACGGATGGTTGATGATAGATCTTTAGATGATGTATCTCTTGAAAGGGGTCTTGATAAAAGCATTAGTGGACAAGAAGATTCCTGGGTTGATGGCGAGCCCCCTGACTTGCTTGGCAAAAATGCTGATATCCGTGAGGCAGATGCTGATGATGAGGATAGATGGCACTGTACAGATATAAGTGATGGAAGGATGAAATATGGCGAGCATGATGACAATTTGAGAGATGATTCTTCGAGAAGGCGCACAAATCGTGGATGGGGAAGATCCAAAGGAAAAGGAAGGGTCAACGAAGGGACTGTAGAAAGTGAAGCCATTGTTTCATCACCTGGTTCTGGTAGTCGACTAGGGCAGGGACGTAGTGTCAGAGATAGGACCATGCAGAGGAATGTCGATGTTAGAAGGGTGCCTGATTCTAAAAAGAATGCTAGGACAACTTCAGATGCTTCTGTTTTGGAAAGAGGGGATAATGATGATTGCTTCAGAGACTGCCGTATTGGAAGTAGAGATATTTCTGATATTGTTCGGAAAGCAATCTGTGCTGCTGAAGCTGAAGCCAGATCTGCCAATGCACCTGATGAAGCTGTTAAAGCAGCTGGTGATGCGGCTGCTGACCTTGTTAAAACCACAGCTTCAGAGGAGTTTAAATCCACTAATGATGAAGATGCTGCTGTTTTGGCTGCTTCAAGGGCTGCATCCACTGTTGTTGATGCTGCATCTGCAGTTGAGGTTTCAAGGAGCTCCATTAGTATCAATACTGAAACAGAGAATGTGAGTGGTGCAGAACCGGAAATTGTTGAGGATGTTGAAGAGTACTTCATCCCAGATATCCAATCCCTTGCACAATTAAGGGAAAAGTATTGCATTCAGTGCCTTGAGTTACTTGGAGAATATGTAGAAGTTCTTGGCCCCGTGTTACATGAAAAGGGAGTAGATGTATGTCTTGCTCTTCTGCAGCAAAATTCCAAACATCGGGAGGCATCCAAGGTTGCTTTACTGTTGCCTGATGTCATGAAGCTGATATGTGCTTTGGCTGCTCATAGAAAATTTGCTGCACTATTTGTGGACCGTGGGGGAATGCAAAAGCTGCTAGCTGTCCCTAGAATGGCTCAAACTTACTTCGGCCTATCGTCTTGTCTATTCACCATTGGTTCCCTTCAGGGAATAATGGAAAGGGTTTGTGCTCTTCCGTCAGACGTCGTTTTTCATGTTGTTGAGTTGGCTCTCCAACTCCTGGAGTGCAACCAAGATCAAGCGCGCAAAAATGCGGCATTGTTTTTTGCCGCTGCATTTGTCTTCAGGGCAGTTCTTGATGCTTTTGATTCTCAAGATGGATTACAGAAATTACTGGGTCTTCTAAATGATGCTGCGTCGGTAAGGTCTGGAGTAAATTCTGGAGCCTTGGGCTTATCAAGTGCAGGATCTCTTCGGAATGATCGATCATCTGCAGAAGTGCTGACATCATCTGAGAAGCAGATTGCCTACCACACTTGTGTTGCTTTGCGACAATATTTCAGGGCACATCTCCTTTTATTAGTTGATTCAATTCGCCCAAACAAAAGTAACCGTAGTGCTGCTAGGAACATCCCAAGTGTAAGGGCCGCATACAAGCCACTTGATATCAGTAATGAGGCCATAGATGCAGTATTCCTACAATTACAAAAAGATCGGAAGCTTGGTCCTGCATTTGTAAGAACTCGCTGGCCAGCTGTGGAGAAATTCTTGGCTTATAGTGGCCATATTACTATGTTGGAATTGTGTCAGGCCCCACCTGTGGAACGATATCTGCATGATTTGCTCCAGTATGCATTGGGTGTTCTGCATATTGTGACTTTGGTACCTAGCAGTCGTAAGATGATTGTAAATGCAACACTAAGCAATAATCGTGTTGGTATAGCAGTGATTTTGGATGCTGCAAATATTGTTAGTAGTCATGTGGATCCGGAGATCATCCAGCCAGCATTAAATGTTTTGGTCAACCTCGTTTGCCCCCCACCTTCAATCAGCAATAAACCTGCTTTGGCTTCACAAAGTCAACAGTCTGCTTCTGCCCAGACCTCAAATGCTCCACCCTTGGAGAGTAGAGACAGGACTGCTGAACGTAATAACCCGGATCGAGTGGTTGCTGTTACCAATCAGATTGATCCTAGAGAAAGGAATGGGGAATCCAGTGCTGTAGATCGAACGACAACGATATCTAGTTCACAAACACTGAATAACACTCCACAAACTCCTGGTTCTGCAACAACCTCAGGATTAGTTGGCGACCGGAGAATCACTCTGGGTGCTGGAGCAGGTTGTGCTGGCCTAGCTGCACAACTAGAACAAGGATATCGTCAAGCAAGAGAAGCTGTTCGTTCTAATAATGGTATAAAGGTTCTTTTGCATCTCCTCCAACCTCGCATATATTCACCACCTGCTGCTCTAGATTGCCTTCGTGCTCTAGCATGTCGAGTCCTACTTGGATTAGCTAGAGATGATACAATTGCACACATATTGACGAAGCTTCAGGTTGGGAAAAAGCTTTCAGAGCTAATTCGCGATTCGGGCAGCCAGACAACTGGAACAGAGCAGGGCAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGTTGATTGGGATTGTGACTAATTCAGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACCTTGAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCTACTCCTATTACATACCATTCAAGGGAACTTTTGCTCCTAATTCATGAACACCTGCAGGCATCTGGATTGTCACAAGCTGCTTCTACGTTGCTTAAAGAGGCTCAATTGACTCCCTTACCATCATTGGCTGCTCCATCTTCTCTTGCACAACAGCCAACAACACCAGAAGTTTCCTCAACATCAATTCAGTGGCCATCTGGCCGGGCCCCTTCTGGATTTCTCAGTAATAAATTAAAAGCTAATGGAAGGGATGAGGATGTCAGCTTGAAAATTGATTCTTTCTCTGCAAAGAAAAAATCATTGACCTTTTCATCATCTTTTGGTTCACATTCAAAACGTCACCTTGCTGATTCACAGCAGCCCCCATCCAGAAAATGGTTAAGTGCTGGGAAGGAATCTTCAGATACTAGTATTCTAGAGATGGCATCTGAATCCTCAGGGAAACATAACATTGATACTGGATCTCACTGTAAGACTCCAGTGAACATGCCAACAAAGCGCAAGCTTTCTGATTTAAAGGATATAGGAATGTTCTCATCATCTGCCAAGCGGTTAAATGTTGGGGACCAAGGACTTCGCTCTCCTATTTTTTCAAGTTCAATACGGAAAACTACTCAGCATGCTGATTTTGCCGGGCTTTCTACACCAATTTCTAACCTAAGAAGTACAGCTGACAATGGGGATGAGAACCAATACAGTATTTCAAATCCAAGTCAGATGATGCCATCCTCCCAAGTGTTAAATGATCTTCAGCCCAACAACCCAGAACGAGTTACCCTTGATTCTCTAGTGGTTCAATATTTAAAGCATCAGCATCGCCAATGCCCAGCTCCTATTACCACTCTTCCTCCACTCTCTCTTCTTCATCCTCATGTTTGTCCTGAGCCAAAGCGAAGCTTAGACGCGCCTTCTAATGTGACTGCTCGGCTTGGTACACGTGAATTTAAACTTGCATATGGAGGAGTGCATGGGAATCGCAAGGATAGGCAATTTGTTTACAGCAGGTTTAGGCCATGGCGCACTTGTAGGGATGATGCTGGTGCCTTGTTAACATGCATTACCTTCCTTGAGGACTCTTCTCATATTGCTGTTGGGAGCCACAATGGGGAGCTAAAATTGTTCGACTCTAACAACAACAACGTGGTGGAGAGCTACACCGGTCACCAGTCTCCTTTGACGCTTGTTCAGTCTTTTGTTTCTGGTGAGACGCAGCTGTTGCTTTCATCAAGCTCCCAAGATGTTAGGCTGTGGGATGCAGCATCAATTTTGACTGGTCCTACCCATTCATTTGATGGATGCAAGGCTGCCAGGTTTAGCAATTCTGGGAATGTCTTTGCAGCCTTGTCAACTGAATCTACGCGGCGGGAAATCCTCCTGTATGATATCCAAACTTGTCAGCTAGAATCGAAGTTGACAGATACATTTGCAACTTCTACTGGGCGTGGTCATGTGTATTCTTTAATCCACTTTAGCCCCTCTGACTCAATGCTGCTTTGGAATGGTGTCCTGTGGGATCGGCGGGTTTCTGGGCCTGTTCATCGTTTTGATCAGTTCACAGACTATGGAGGTGGAGGCTTTCATCCTGCTGGTAATGAGGTAATTATAAACTCAGAAGTCTGGGATCTGCGCAAGTTCAGGCTATTACGTAGTGTTCCTTCATTAGATCAAACATCAATAACATTCAATGCACGTGGTGATGTAATGTATGCAATCTTGAGGAGAAATCTAGAAGATGTGATGTCAGCAGTCCACACACGTCGTGTCAAGCATCCTCTTTTTGCTGCATTCCGAACAGTTGATGCAATTAATTATTCTGACATAGCTACTATACCTGTGGATCGCTGTGTCCTTGATTTTGCAACTGAGTCAACAGATTCATTTGTTGGATTGATTACTATGGATGATCAAGATGAGATGTATGCATCAGCTAGAGTTTATGAAATTGGTCGCCGGAGACCAACTGATGATGATTCTGATCCTGATGATGCAGAAAGTGAGGAGGAAGATGAGGATGACGATGATGACGATGGTGATGTAGATCCACTGTTAGGCCCTGGTTTCCGTGGTGAGAGCGATAGTGATCCTGATGACATGAGCAATGATGAAGATGATGATAGTATAAGTGAACTTGATGATGATGAAGATGGTGACTTTATGTTGGATGATGTCGAGTTCGACGGAGGACCTGGGATATTGGAGATTTTGACGGAGGGGGAAGAGGAGGATGATGAAGATAGTGAAGTACTCGAATCCTTAAGTAGCGATGAAGAGGATTATGTGGGTAATGGCTTTGGTTATTAA 5865 0.4506 MEDQANQNQSQGPPPPQPPPLPAPESEPPVEEEEEDEEDDSKKEEEELVAKVNRLMEKIISAPDNPKPAVLHALASILETQESRYMEENGYSSSSNARAAHNIGRLGSLIRENDEFFELISSKFLAESTYSTAVQAATCRLLLCCSLTWIYPHVFDEPVLDCIKEWVLDDNGRLSAEEQNLKHNSGRRDASDSEMLKTYSTGVLAVCLVSGGQVVEDVLTSGLSAKLMRYLRLRVLGETSSSQKEITHATDSRHASGNSSVRVRDDGRGRFRQLLEPCHLDDSRMVDDRSLDDVSLERGLDKSISGQEDSWVDGEPPDLLGKNADIREADADDEDRWHCTDISDGRMKYGEHDDNLRDDSSRRRTNRGWGRSKGKGRVNEGTVESEAIVSSPGSGSRLGQGRSVRDRTMQRNVDVRRVPDSKKNARTTSDASVLERGDNDDCFRDCRIGSRDISDIVRKAICAAEAEARSANAPDEAVKAAGDAAADLVKTTASEEFKSTNDEDAAVLAASRAASTVVDAASAVEVSRSSISINTETENVSGAEPEIVEDVEEYFIPDIQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTYFGLSSCLFTIGSLQGIMERVCALPSDVVFHVVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASVRSGVNSGALGLSSAGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAARNIPSVRAAYKPLDISNEAIDAVFLQLQKDRKLGPAFVRTRWPAVEKFLAYSGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGIAVILDAANIVSSHVDPEIIQPALNVLVNLVCPPPSISNKPALASQSQQSASAQTSNAPPLESRDRTAERNNPDRVVAVTNQIDPRERNGESSAVDRTTTISSSQTLNNTPQTPGSATTSGLVGDRRITLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTTGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLSQAASTLLKEAQLTPLPSLAAPSSLAQQPTTPEVSSTSIQWPSGRAPSGFLSNKLKANGRDEDVSLKIDSFSAKKKSLTFSSSFGSHSKRHLADSQQPPSRKWLSAGKESSDTSILEMASESSGKHNIDTGSHCKTPVNMPTKRKLSDLKDIGMFSSSAKRLNVGDQGLRSPIFSSSIRKTTQHADFAGLSTPISNLRSTADNGDENQYSISNPSQMMPSSQVLNDLQPNNPERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKLAYGGVHGNRKDRQFVYSRFRPWRTCRDDAGALLTCITFLEDSSHIAVGSHNGELKLFDSNNNNVVESYTGHQSPLTLVQSFVSGETQLLLSSSSQDVRLWDAASILTGPTHSFDGCKAARFSNSGNVFAALSTESTRREILLYDIQTCQLESKLTDTFATSTGRGHVYSLIHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATESTDSFVGLITMDDQDEMYASARVYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDGDVDPLLGPGFRGESDSDPDDMSNDEDDDSISELDDDEDGDFMLDDVEFDGGPGILEILTEGEEEDDEDSEVLESLSSDEEDYVGNGFGY* 1955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2020 1954 SUPERFAMILY WD40 repeat-like 1524 1755 IPR036322 GO:0005515
Amo08g2020 1954 PANTHER VPRBP PROTEIN-RELATED 1003 1302 IPR033270 GO:0016567
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1292 1348 - -
Amo08g2020 1954 Gene3D - 1524 1848 IPR015943 GO:0005515
Amo08g2020 1954 MobiDBLite consensus disorder prediction 384 406 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 953 1035 - -
Amo08g2020 1954 PANTHER BNAA03G51310D PROTEIN 339 988 - -
Amo08g2020 1954 SMART Lish 1194 1226 IPR006594 GO:0005515
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1883 1910 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1292 1352 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1 46 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1007 1035 - -
Amo08g2020 1954 PANTHER BNAA03G51310D PROTEIN 1287 1834 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1232 1258 - -
Amo08g2020 1954 PANTHER VPRBP PROTEIN-RELATED 1287 1834 IPR033270 GO:0016567
Amo08g2020 1954 MobiDBLite consensus disorder prediction 242 257 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1847 1868 - -
Amo08g2020 1954 PANTHER BNAA03G51310D PROTEIN 37 281 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1923 1942 - -
Amo08g2020 1954 PANTHER BNAA03G51310D PROTEIN 1003 1302 - -
Amo08g2020 1954 SUPERFAMILY ARM repeat 581 1155 IPR016024 -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 302 409 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 27 43 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1834 1954 - -
Amo08g2020 1954 ProSiteProfiles LIS1 homology (LisH) motif profile. 1194 1226 IPR006594 GO:0005515
Amo08g2020 1954 SMART WD40_4 1523 1563 IPR001680 GO:0005515
Amo08g2020 1954 SMART WD40_4 1611 1649 IPR001680 GO:0005515
Amo08g2020 1954 SMART WD40_4 1566 1606 IPR001680 GO:0005515
Amo08g2020 1954 Coils Coil 31 51 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 320 366 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 1232 1265 - -
Amo08g2020 1954 PANTHER VPRBP PROTEIN-RELATED 37 281 IPR033270 GO:0016567
Amo08g2020 1954 MobiDBLite consensus disorder prediction 953 975 - -
Amo08g2020 1954 MobiDBLite consensus disorder prediction 11 26 - -
Amo08g2020 1954 PANTHER VPRBP PROTEIN-RELATED 339 988 IPR033270 GO:0016567
Amo08g2020 1954 MobiDBLite consensus disorder prediction 242 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2020 Amo-Chr8 32576084 32584794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2020 1550 1756 U-box Gene Family AT2G33340 25.000 1.50e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2020 K11789 - gmx:100796030 2804.62