Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2015 ATGGTGGCAACGAACTTGGACAGATTCCCAAACAAGGAAAGCCAGCATAGAACCCAAATCCTCATTGGTAGCATGTCTGCAGAGTGCCAAGTGTTAGAAACTATACACCAAGATGAAACTAGCAAGGTCTTATCAACAATGATGATTGTGCAAAGGGCAGCTGCAAAGACAGAACCTCACACTATTAATAATAATGATAAGTATCCAAGAAGCAAAAATAGCAGTAATAATGTGAAGTTATCACAGAATAAAGTATTGAAGAAAACAAATAGCTATGACAATAGCAGTGTCAACAAAAGAAGCTCCATTTACAGAGGAGTCACCAGGCATAGGTGGACAGGGAGGTTTGAAGCTCATCTGTGGGACAAGAATTCTTGGAATAATATCCAGAGTAAGAAGGGACGACAAGGGGCATATAATACAGAAGAAGCTGCTGCTCGCTCCTATGATCTTGCTGCTCTAAAGTATTGGGGACCTAATACAATCTTAAATTTTCCGATGGAAACATATGCCAAGGAAATTGAGGAAATGAAGGATGTTTCACAAACTGAATACTTGGCTTCTCTGCGAAGAAGGAGCAGTGGATTTTCAAGAGGTGTTTCCAAGTATCGTGGAGTGGCTAGGCATCACCACAATGGAAGGTGGGAAGCACGAATTGGAAGAGTAAATGGCAACAAGTACCTTTATCTGGGGACCTATAACACTCAAGAAGAGGCGGCAGCAGCATATGATAGAGCAGCTATAGAGTACAGAGGAATAAATGCAGTAACAAATTTTGATATAAGCAATTATATTGACAAAATAAAGAAGAATGAGCCGTCTATGAAAGAAGCACAAACACATATAACTCCAATCTCTACTGAATCTAAAGAAGCAGAAGTAGTGCAGCAGGAGGCTCCTTCCACAGTAGTGGCAGATCCAGCAAATTTAGGTAACCAGAAAAAAGAAAATATGCAGAAGAAAAAAGAGCAGCCCAATACAGATATCAACGGCATACTTTCTCGGGATCTGAGATGGAGCTTCATGGATGCCGAATTATCCGAGTTCAACATGAATGATATTTTTCAAGGTGAAGGTAGTGGGTTGGAGGATGACATCAATCTTATGTGTATGGCTGATCCTGATGAGAGTAGTTTCAATCTGAACACTATCTTTGATGATCCTGGAAAATGTGGTGGAGATATGCATGTCTATGCCAATTATTAA 1206 0.4022 MVATNLDRFPNKESQHRTQILIGSMSAECQVLETIHQDETSKVLSTMMIVQRAAAKTEPHTINNNDKYPRSKNSSNNVKLSQNKVLKKTNSYDNSSVNKRSSIYRGVTRHRWTGRFEAHLWDKNSWNNIQSKKGRQGAYNTEEAAARSYDLAALKYWGPNTILNFPMETYAKEIEEMKDVSQTEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVNGNKYLYLGTYNTQEEAAAAYDRAAIEYRGINAVTNFDISNYIDKIKKNEPSMKEAQTHITPISTESKEAEVVQQEAPSTVVADPANLGNQKKENMQKKKEQPNTDINGILSRDLRWSFMDAELSEFNMNDIFQGEGSGLEDDINLMCMADPDESSFNLNTIFDDPGKCGGDMHVYANY* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2015 401 Gene3D AP2/ERF domain 201 262 IPR036955 GO:0003700|GO:0006355
Amo08g2015 401 Gene3D AP2/ERF domain 103 168 IPR036955 GO:0003700|GO:0006355
Amo08g2015 401 MobiDBLite consensus disorder prediction 307 326 - -
Amo08g2015 401 ProSiteProfiles AP2/ERF domain profile. 103 166 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 Pfam AP2 domain 201 252 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 Pfam AP2 domain 103 158 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 ProSiteProfiles AP2/ERF domain profile. 202 260 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 CDD AP2 201 262 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 CDD AP2 102 166 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 PRINTS Ethylene responsive element binding protein signature 242 262 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 327 - -
Amo08g2015 401 SUPERFAMILY DNA-binding domain 102 168 IPR016177 GO:0003677
Amo08g2015 401 SUPERFAMILY DNA-binding domain 201 262 IPR016177 GO:0003677
Amo08g2015 401 SMART rav1_2 103 172 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 SMART rav1_2 202 266 IPR001471 GO:0003700|GO:0006355
Amo08g2015 401 MobiDBLite consensus disorder prediction 58 77 - -
Amo08g2015 401 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 49 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2015 Amo-Chr8 32471165 32481436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2015 196 270 AP2-EREBP Transcription Factor Family AT5G57390 39.759 2.78e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo08g2015 AP2 7.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2015 - - adu:107463124 669.077