Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1996 ATGGATGACTATTCTGGAAAAAGAGCAATTGATGGGGTGGTAGTCCCTAAAAAGGGGATGGGCCATTTGTTTAGAGATTCTGCTAATACTAGAGATAGAAATGGTCAAGTGTGCAGCCGTCTTGGTTGCAGTAGTAAAGTCAACTCTCCTAAAGGTTCTCAAATTGGTTCTTCTGAAAAGGGTAAATCTTTGAGAACTTCTTTTCGAACTACATCCAGTGGTAAGGAAGCAATTGGAAGTTCTTCTAGAACTTTCACAGGGAATAATAACTCAGGAAAATCCCTTATAAAACCTCGGAAGACATTATCCTCTCAATTAGAGGCTGATTCTTCAGAAACTAGTAGTGTACATGATGAGACAGAAGTTTCAAATCTCGCCCCTCCACCTGAAAACTTTCGGAGAGTGCTTCAAGCAGAAGTGGAAAATGTAGGATCTAGTAGTGTTGTGCAGATGGAAGTAGGGAGCTCTAGCGTAGCATCATCTAATACAGGATCACGGAGGAATTTCCATCCAAAGCCTGTTTTGCGTGGTCAAGAAACTAAAAGCAGTGGCGCAGCAACACGAGCCGGGACCAGTAGGTACGGATTAAGAAACCTCAGATGCAACTCCATATCTGATGTCGTCCCTGCTGGCTTTCAACCACCAGACTCGGCCAATAATAGAAGAAAGGATACAGTAAAAAAGAGAAACTGTGAAGGGGAAAGTAGTTCAACAGCTAGAGGGAAGAAGATCAATGGTTCTTCATTAGAAGGACGGAATTCTGGTCCTAGAAATGGTATATCTATCTCTGATTCAAGAAGACCCAGAAATATGCCTTCTAATAATAGGGACAGGCCAGACAGCAATGTAATGTCAGTCAGAACACGGAGGCCGACTAATGGTAATGCGAGGGGAAGACTTTCTAATCAAAGTAATGCTAATCCCGTGGCATCGAATGAGCCTGTTGTCATGATACCTACTTTGCCTCATTCAGGTGATCATAATGCTCCTGGTGTATTGCATCTCCCTTCTCCGGAGGCTCCTTTAAGATGTCCTGTCTCTTACAATAGACCTGGTAGTAGCAGTGATGAACTGTATGGTATTATGCCTATGTCTCCCACAGAATATGGCATCACTCATTCTCTTATAAATCGGGACAACTTTCGACGACGCTATAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGAATTGAGCAAGATGTTGAGCTAACACACGAGCAAATTCTTTTACTTGAGTCGAACTTGCTCCTCACTGGACTAAACTTCTATGATCAACATAGAGACATGCGGTTGGACATCGATAACATGTCATATGAGGAACTATTAGCTTTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCATTATCAGAGTGCCTAAAGAGAAGTTTCTTCAAATCCTTACCTTCAGATGATGTAACTGAGACTTTCAATGGGAATAAGAATAAGGACGATACCAAATGTAGCATCTGTCAGGAGGAATATGTGGTTGGAGATGAGGTGGGGAATTTGCAATGTCAACATATGTTCCATGTGGTTTGCATCCAACAATGGCTGAGGCTCAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCAAAGCCATCAACTCCGCCGTCACCGCCGCCGTCACCGCCGCCGTCATCATCATCACCTTCATCCTATTGA 1689 0.434 MDDYSGKRAIDGVVVPKKGMGHLFRDSANTRDRNGQVCSRLGCSSKVNSPKGSQIGSSEKGKSLRTSFRTTSSGKEAIGSSSRTFTGNNNSGKSLIKPRKTLSSQLEADSSETSSVHDETEVSNLAPPPENFRRVLQAEVENVGSSSVVQMEVGSSSVASSNTGSRRNFHPKPVLRGQETKSSGAATRAGTSRYGLRNLRCNSISDVVPAGFQPPDSANNRRKDTVKKRNCEGESSSTARGKKINGSSLEGRNSGPRNGISISDSRRPRNMPSNNRDRPDSNVMSVRTRRPTNGNARGRLSNQSNANPVASNEPVVMIPTLPHSGDHNAPGVLHLPSPEAPLRCPVSYNRPGSSSDELYGIMPMSPTEYGITHSLINRDNFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLLLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRSFFKSLPSDDVTETFNGNKNKDDTKCSICQEEYVVGDEVGNLQCQHMFHVVCIQQWLRLKNWCPICKASVAKPSTPPSPPPSPPPSSSSPSSY* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1996 562 SUPERFAMILY RING/U-box 483 542 - -
Amo08g1996 562 Pfam Ring finger domain 494 536 IPR001841 -
Amo08g1996 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 540 IPR045191 GO:0061630
Amo08g1996 562 MobiDBLite consensus disorder prediction 154 191 - -
Amo08g1996 562 MobiDBLite consensus disorder prediction 30 121 - -
Amo08g1996 562 MobiDBLite consensus disorder prediction 17 130 - -
Amo08g1996 562 MobiDBLite consensus disorder prediction 207 312 - -
Amo08g1996 562 Coils Coil 397 417 - -
Amo08g1996 562 MobiDBLite consensus disorder prediction 237 311 - -
Amo08g1996 562 ProSiteProfiles Zinc finger RING-type profile. 495 536 IPR001841 -
Amo08g1996 562 MobiDBLite consensus disorder prediction 539 562 - -
Amo08g1996 562 MobiDBLite consensus disorder prediction 542 562 - -
Amo08g1996 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 542 IPR013083 -
Amo08g1996 562 MobiDBLite consensus disorder prediction 220 236 - -
Amo08g1996 562 MobiDBLite consensus disorder prediction 154 168 - -
Amo08g1996 562 SMART ring_2 495 535 IPR001841 -
Amo08g1996 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1996 Amo-Chr8 32281148 32286251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1996 375 541 C3H Transcription Factor Family AT2G15530 38.728 2.56e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1996 - - gmx:100787213 750.74