Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1974 ATGGCGTCTTGTGGTTCCAACGGAGTTGAATCCCCAAACACGCTCCAATCCATATGTTACAACCGCGGTTCCCTTCAGCTTCTCGATCAGAGGAAGCTACCTCTGGAAACAATTTTTTTGGACATAAAGGATTCTACTGATGGCTGGAATGCCATACGGGATATGGTGGTCCGGGGAGCACCTGCTATTGCCATTGCAGCCGCACTCTCTCTGGCTGTTGAGGTGTCTAATCTAGGTTCTTTTAATGGGTCGCCTGGTGATGCTGCTTCCTTGTTGCAAAGCAAGTTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTAAACTTATCAGATGCTGCAACAAAGCTAAAAGAAGTCATATCTAAGGCTGCTGCTACCAGTTCAGAGGCCAGGAGTGTTTTCCAGGCATATATAGAAGCAGCGGAAATTATGCTTGAGGATGATGTTGCCTCGAACAAAGCAATTGGTTCATATGGAGCAAAGTTCATGCAACAGCAAATGGAGAAACAGAAACTTTCTGTCTTGACCCATTGCAACACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTAATTCGCGCACTTCACAGTGGAGGAGTTTTAGAAAGGGCTTATTGCACTGAAACCCGGCCATTTAATCAAGGTGCTAGACTTACTGCCTATGAGTTAGTGCATGATAAAATACCAGCTACTCTTATAGCAGATTCTGCTGCTGCTGCCTTAATGAGAGCCGGACGCGTGGATGCTGTTGTTGTTGGGGCCGATCGTGTTGCATCAAATGGTGACACAGCCAACAAAATTGGGACCTATAGCGTTGCCTTGTGTGCCAAGTTTCACAATGTACCTTTTTATGTGGCTGCACCGCTGACTTCGATTGATCTGTCACTTTCTTCCGGAGAAGAAATTGTCATCGAGGAGAGATCTCCGAAGGAGTTGTTGAACACACGAGGAGGACTTGGAGAGCAAGTTGCTGCCTCAGGAATTTCGGTATGGAATCCGGCTTTCGATGTTACACCTGCTGGTCTAATACATGGAATCATAACTGAGAAGGGTGTCATTACAAAGATGTCTTCGGCTGATGCTTTTGACATAAAAGCATTCATACAGAAAACAGGTTAG 1128 0.4601 MASCGSNGVESPNTLQSICYNRGSLQLLDQRKLPLETIFLDIKDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVSNLGSFNGSPGDAASLLQSKLEYLVSSRPTAVNLSDAATKLKEVISKAAATSSEARSVFQAYIEAAEIMLEDDVASNKAIGSYGAKFMQQQMEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAYCTETRPFNQGARLTAYELVHDKIPATLIADSAAAALMRAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGEEIVIEERSPKELLNTRGGLGEQVAASGISVWNPAFDVTPAGLIHGIITEKGVITKMSSADAFDIKAFIQKTG* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1974 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Amo08g1974 375 SUPERFAMILY NagB/RpiA/CoA transferase-like 13 358 IPR037171 -
Amo08g1974 375 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 16 358 IPR005251 -
Amo08g1974 375 Pfam Initiation factor 2 subunit family 57 357 IPR000649 GO:0044237
Amo08g1974 375 Gene3D - 13 169 IPR027363 -
Amo08g1974 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Amo08g1974 375 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 15 367 IPR005251 -
Amo08g1974 375 Gene3D - 170 369 IPR042529 -
Amo08g1974 375 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 43 358 IPR011559 GO:0044249
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1974 Amo-Chr8 31960292 31966077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1974 54 373 Eukaryotic Initiation Factors Gene Family AT2G05830 77.259 1.27e-171 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1974 K08963 - gmx:100799311 575.859