Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1973 ATGAATCTCCCTTCTCTCACTTACTTCCCTCAGAAACTTGTTCCTCCTCTCTGCTCTGCTCTTACCAACTCCACCAGAAGCAGTGGTACTGCTGATAATATTGCTATTGAAGGTTGCAATTTGAAGTTCTCGTTCACAGCAACGAGGCAAGCAAAGGTGGTGCCTGTGCTTAGGGATTGTTCGTTTCGCATTCCTTCTGGGCAGTTTTGGATGCTTCTTGGACCAAATGGGTGTGGAAAATCTACCCTCTTAAAGATTTTGGCTGGTCTATTGAATCCAACTTCAGGAATAGTGCATGTTAATGAACCTAAGAGTTTTGTTTTTCAAAATCCTGACCATCAGGTGGTGATGCCAACTGTAGACGCCGATGTTGCATTTGGTCTTGGTAAGTTCAGCTTGACTAATGATGAAGTAAGGTCTAGGGTGTCGAGAGCCTTGCATGCTGTAGGCCTCTCTGACTACGAGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCAATTGCCGGTGCTTTAGCAGAAGCTTGTAAAGTTCTCTTGTTGGATGAGCTCACAACATTCTTAGATGAAACTGACCAGGTCGGGGTTATCAAGGCTGTTAGAAACTCTTTGGATACATCTGCAGAAGTTACAGCATTATGGGTGACCCATCGTTTGGAAGAACTAGAATATGCAGATGGTGCCATATACATGGAGGATGGGAAAGTTGTCAAATATGGAGATGCAGCTAGCATTAGGAGTTTCATTGAAGCCAAGCAATCTGAATATCTTTCAAATGCATATTAG 798 0.4386 MNLPSLTYFPQKLVPPLCSALTNSTRSSGTADNIAIEGCNLKFSFTATRQAKVVPVLRDCSFRIPSGQFWMLLGPNGCGKSTLLKILAGLLNPTSGIVHVNEPKSFVFQNPDHQVVMPTVDADVAFGLGKFSLTNDEVRSRVSRALHAVGLSDYEKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNSLDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVKYGDAASIRSFIEAKQSEYLSNAY* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1973 265 Pfam ABC transporter 57 189 IPR003439 GO:0005524
Amo08g1973 265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 262 IPR003439 GO:0005524
Amo08g1973 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 26 262 - -
Amo08g1973 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 254 IPR027417 -
Amo08g1973 265 Gene3D - 31 264 IPR027417 -
Amo08g1973 265 ProSitePatterns ABC transporters family signature. 162 176 IPR017871 GO:0005524
Amo08g1973 265 CDD ABC_cobalt_CbiO_domain1 43 239 IPR015856 GO:0005524|GO:0016020|GO:0055085
Amo08g1973 265 SMART AAA_5 66 239 IPR003593 -
Amo08g1973 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 26 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1973 Amo-Chr8 31950563 31953943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1973 54 244 Calmodulin-binding Proteins AT2G36910 29.665 2.43e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1973 - - gmx:100813654 413.69