Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1938 ATGGCCAAAACACGTTCCAATTCCCTGCTTCAAACTCTACTTGTCTTCTTCGTAATCACTCCTATAATCACTGCTATTCCAGATTGTAGTAATCCAAGTAATGCCCTCTCTCCTCTATCCACACAACCTTCATCTCCATGGACTTCACCATCCAAAGATTTTGCCTTCGGTTTTCAATCTGTTCAATTCAAGGATCCACGCTGTGTCCCTCTGCTCTCCATCTACTTCACCAAATCACCCAACAAGACCATTGTTTGGTACGCGAAACCCAACCAAGAAATCCCGGTTGGGTCCTCTATCCATATCACAAACAATAGTCTCGTCATATATAACCCCAAAGGAAGTGAAATTTGGTCCCGTCCAGAAAAGAAGGACAAAATGGTAACTTGTGCTTCTATGCTAGATACTGGAAACTTTGTTCTTAAAGACAACGACGGTAATATAGTTTGGGAGAGTTTTGAAGAACCAAGCGACACGCTTCTCCCCGGTCAGAATTTTTCCAAGTCTCAGCCATTCAATTTGCAAGCTCGTCAATCGGAAACAAATTTCTCAACTAACAATAACTTCAATCTCAGCTGGCAAGGCGATGGCAATTTGGTACTTTACTATTCTCAAAATCACCAAGAACATGAACAGGCGCAGAATTATGCATACTGGTCAACCGGAACTGACGGTCGCGGATCGGGTTTATTCTTCGATAAGTTCGGACGGATTTACGTGAAGGATGATAATAACACTGAGCTGGTCCAAGTAACAAACGGGAACCCAGGTTCAACTCAATATTTTTACATGGCGAGATTTGAATCTGATGGAGTCTTCAGGCTGTACCAGAAGACTAAAACGGTTACAAACGAGGAGGATAACTGTTCTTCTGGATGGACAATGTGGGAACAAGAACCTGATGATATATGTGTTCTTATGATAGCTCAGAATGAAAATTTTATCTGTGGGCCTAACAGTTATTGTGTTTCCATAAATGGAAAGCCTCAATGCATGTGTCCAGATAATTATTCCTATTTTGTGCAGCCTAATGATCCAAACAACTTAACAAGTTGTAGGCCGGATTTTCCGCCTCCCAGCTGTCTGGTCGACGGCTGGGAGATGGATCCGGCCAAGGTGGATTTCCATGAACGGCAGAATTTGGACTGGCCTTTCTCCGATTACGAGTTGGTGAGCGGTGATTTCGATAACTACACGTGTCGAAAAAGGTGCCGTGACGATTGCTTCTGTGCCGCGGCTGTATATTCCGTTGATAAGGACAATGTGGCACAATGTTGGAAGAAGAAGTACCCTTTGAGTAATGGAAGGTATAGTACGACAGCCGAAAATGGAAAAACAGTGTTCCTCAAGTTTCGCAAGGCAGGGTATGGTAACCAACATCGATCTTATTTAACACTTATTTTGTCATTTCTTCTTGGGAGCTCGGTTTTCCTCAACATTCTGTTGGTGTTGGGAATTCTTGGAATTTACATGTTCTTGCGCAAGAGAAAGATGTTAGGGCAGCAACTAGTTGCGAGCTTGGCGCCGGAGACGGTTAGAAGCTACACATACAAAGAGCTTGAGAAGGCGACACGTGGATTCAAACTGAGATTGGGTCAAGGTGCTTTTGGAACTGTGTATAAAGGGGTATTAGAATTAGGGTCTAATACAAAAAGATATGTAGCTATTAAGAAGTTAGATAAGGTGGTTGAAGAAGGTGAAAATGAATTCAAAACAGAGGTGAGTGTGATAGGCCAAACCCACCACCGGAACTTGGTTCGGTTGCTTGGTTACTGCGACGAAGGGGAGCATCGTCTTCTTGTGTATGAGTACATGAGCAATGGTTCATTGGCGAGCTTTCTTTTTGGGATTTCTAGGCCTCATTGGAATCAAAGAGTGCAAATTGGATTGGGAATAGCTAAAGGACTCACATACTTGCATGAAGAGTGTAACACCCAATTCATTCATTGCGATATCAAGCCTCAGAACATTCTTCTGGACGACTTATTCGCACCCAGGATATCCGATTTTGGGCTGGCAAAGCTGTTGCTGGCGGAGCAAACTCGCGCCACTAGGACGCACGCGAGAGGGACTATTGGATACTTTGCACCTGAATGGTTTACAAAAGCTTCAATCACAAGCAAAGTCGATGTTTATAGCTTTGGAGTGGTGCTGCTAGAGCTCATATGCTGCAAATCCAGTATTGTGTTTTCAATGTCAAATGATGAAGAACAAGCGCTTATAGATTGGGCATATGATTGTTACAAACATGGAAATTTGGCTCAGTTTGTTGAGAATGATGAGGAGGCAAAGAATGATATTAGYAGGGTYGAAAAACATGTTATGGRAGCAATTTGGTGRGTTCAAGATGATCCTTCACTAAGGCCTTCTATGAAGAAGGTTGCTCAAATGCTTGAGGATGTTATTGCTGTACCTTTGCCACCTCGACCTTCCATGTTTTGTTCATCATCTGCAACTTCGTTTAGTGTTTCTTTTTGA 2478 0.4286 MAKTRSNSLLQTLLVFFVITPIITAIPDCSNPSNALSPLSTQPSSPWTSPSKDFAFGFQSVQFKDPRCVPLLSIYFTKSPNKTIVWYAKPNQEIPVGSSIHITNNSLVIYNPKGSEIWSRPEKKDKMVTCASMLDTGNFVLKDNDGNIVWESFEEPSDTLLPGQNFSKSQPFNLQARQSETNFSTNNNFNLSWQGDGNLVLYYSQNHQEHEQAQNYAYWSTGTDGRGSGLFFDKFGRIYVKDDNNTELVQVTNGNPGSTQYFYMARFESDGVFRLYQKTKTVTNEEDNCSSGWTMWEQEPDDICVLMIAQNENFICGPNSYCVSINGKPQCMCPDNYSYFVQPNDPNNLTSCRPDFPPPSCLVDGWEMDPAKVDFHERQNLDWPFSDYELVSGDFDNYTCRKRCRDDCFCAAAVYSVDKDNVAQCWKKKYPLSNGRYSTTAENGKTVFLKFRKAGYGNQHRSYLTLILSFLLGSSVFLNILLVLGILGIYMFLRKRKMLGQQLVASLAPETVRSYTYKELEKATRGFKLRLGQGAFGTVYKGVLELGSNTKRYVAIKKLDKVVEEGENEFKTEVSVIGQTHHRNLVRLLGYCDEGEHRLLVYEYMSNGSLASFLFGISRPHWNQRVQIGLGIAKGLTYLHEECNTQFIHCDIKPQNILLDDLFAPRISDFGLAKLLLAEQTRATRTHARGTIGYFAPEWFTKASITSKVDVYSFGVVLLELICCKSSIVFSMSNDEEQALIDWAYDCYKHGNLAQFVENDEEAKNDISRVEKHVMXAIWXVQDDPSLRPSMKKVAQMLEDVIAVPLPPRPSMFCSSSATSFSVSF* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1938 825 CDD PAN_AP_plant 357 450 - -
Amo08g1938 825 SMART serkin_6 525 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1938 825 Gene3D - 37 153 IPR036426 -
Amo08g1938 825 ProSitePatterns Protein kinases ATP-binding region signature. 531 558 IPR017441 GO:0005524
Amo08g1938 825 ProSiteProfiles Bulb-type lectin domain profile. 39 154 IPR001480 -
Amo08g1938 825 Gene3D - 159 297 IPR036426 -
Amo08g1938 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Amo08g1938 825 SMART blect_4 34 156 IPR001480 -
Amo08g1938 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 180 277 IPR036426 -
Amo08g1938 825 Gene3D Phosphorylase Kinase; domain 1 491 604 - -
Amo08g1938 825 Pfam Protein kinase domain 530 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1938 825 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 820 - -
Amo08g1938 825 Pfam D-mannose binding lectin 83 170 IPR001480 -
Amo08g1938 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 223 IPR036426 -
Amo08g1938 825 PANTHER - 11 820 - -
Amo08g1938 825 ProSiteProfiles Protein kinase domain profile. 525 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1938 825 Gene3D Transferase(Phosphotransferase) domain 1 605 804 - -
Amo08g1938 825 PIRSF SRK 4 824 IPR024171 GO:0004674
Amo08g1938 825 SUPERFAMILY Protein kinase-like (PK-like) 508 798 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1938 Amo-Chr8 31610116 31612759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1938 508 813 Receptor kinase-like Gene Family AT5G38280 40.506 3.97e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo08g1938 Pkinase 8.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1938 - - ahf:112707732 1518.06