Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo08g1925 | ATGAATGACGGTAGACAAATGGGGTTGCATTACATGGATAATGGCTTCCCTTATGCTGTTAATGATAGCAACTTTGTGGATTTCTTCCAAGGAGTGTCGCACGTTCCAGTCAATTATGCCTTTGCTGGCTCAATGCCTGATCAGGAATGCGTTTACTGGTCGATGAACATGAATCAATATAAGTTTGGATTATCTGGTCCAGGAAGTACATCCTATTATGGTTCTTATGAGGTAAATGATCATTTGCCTAGAATGGAGATCAACAGGGCAGAGTGGGAATATCCTTCAGTAACAATCACTGAGGAGCCAGCTACAGCAGATTCTCCACCCATAAGAGAGGGAGTCACAAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCGATGGCAGCCAGGTCATATGGCAAGATGACATTGATCCTGACAATATGACATACGAGGAACTACTGGATTTGGGGGAGGCAGTTGGAACTCAAAGCCGAGGTCTCTCGCAAGAACTTATTGATACACTTCCAACCTCCAAGTACAAATTTGGAAGTTTATTCAAACGAAAAAATTATGGTAAAAGGTGTGTCATTTGTCAGATGACATATAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGCCATGTCTATCATTGTGAATGCATTACCAAATGGCTTGGCATTAACAAGAAATGTCCAGTTTGCAATATTGAAGTGTTTGGTGAGGAATCAACCCATTAG | 741 | 0.4211 | MNDGRQMGLHYMDNGFPYAVNDSNFVDFFQGVSHVPVNYAFAGSMPDQECVYWSMNMNQYKFGLSGPGSTSYYGSYEVNDHLPRMEINRAEWEYPSVTITEEPATADSPPIREGVTSMQTIPEECSPNHHESDGSQVIWQDDIDPDNMTYEELLDLGEAVGTQSRGLSQELIDTLPTSKYKFGSLFKRKNYGKRCVICQMTYRRGDQQMKLPCSHVYHCECITKWLGINKKCPVCNIEVFGEESTH* | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo08g1925 | 246 | SMART | ring_2 | 195 | 235 | IPR001841 | - | |
| Amo08g1925 | 246 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER | 1 | 246 | - | - | |
| Amo08g1925 | 246 | Pfam | Ring finger domain | 194 | 236 | IPR001841 | - | |
| Amo08g1925 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 240 | IPR013083 | - | |
| Amo08g1925 | 246 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 246 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
| Amo08g1925 | 246 | SUPERFAMILY | RING/U-box | 194 | 240 | - | - | |
| Amo08g1925 | 246 | ProSiteProfiles | Zinc finger RING-type profile. | 195 | 236 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo08g1925 | Amo-Chr8 | 31401610 | 31408168 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo08g1925 | 10 | 246 | C3H Transcription Factor Family | AT3G63530 | 57.983 | 8.49e-103 | 296 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo08g1925 | K19045 | - | gmx:100792734 | 446.432 |