Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1919 ATGAGGAAACCGGATAATAATATGGGGAAGGACAAAATGGGAAATAACAACACTATTATTAAGAGCAAGCTTAGAAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTATTAAGGTACATGCTCACCAGTGGACAAGGTTGTTGGACCGACATTGCGAGGAATGCCGGCCTCCAACGGTGCGGCAAGAGTTGCCGCCTCCGTTGGATTAACTACCTAAGGCCGGACCTTAAACGCGGCGCTTTTTCGCCGCAAGAAGAAGATCTCATTGTTCATTTACATTCCATTCTTGGCAACAGGTGGTCTCAGATAGCAGCACGTTTACCTGGGCGTACAGACAATGAGATAAAGAATTTCTGGAACTCCACACTCAAGAAAAGATTCAAACTTAGCACCAATAACACCCCATCACCAAACAACAATAGTAGCAGTGATGACTCTTCATCAGATCCTAATAATGCTAATGGAATCATCATGGTGCACCTCAATGAACAACAACATGATCTCATGCCCATGTCAATGTGCATGGACTCATCATATTCTTCTTCATCAACTTCTTCATCAATCTCATCCATGCATCAACAACAAGCAGCACCAATGGTTTTTTCTGACCAATATAATGACCCATTTTCTATCTTGATAAATAATAATGATGTGCCTCAATGCTTGATGACCCAATTTGGTGGCATGGTAGAGGAGGGGCATAATGGGAATTATGGAATTATGGGGTCTAACAATAAAATAGGGCTAGAAAGAGAGTTGTCACTTCCTCCACTAGAAAGTGACAATAATGCCCCTATTATTGATGTGAAAAAACATAACAACCATTTCAATCATCATCATCATAGTGGTTGCTTCAATAATGCTCATCAGAAGGTTTCCAAGGTGGAGGAATTGTTTGGGTTTGGAAATAATAACAATAATGATCATCATGGGCATCAGCAATTGCATCAAGGGGAAAACTTGAAAATTGGAGAATGGGATTTGGAGGGTCTCATGCAAGATATGTCCTCTTTCCCTTTTCTTGATTTTCAAGTTGAATAA 1044 0.408 MRKPDNNMGKDKMGNNNTIIKSKLRKGLWSPEEDEKLLRYMLTSGQGCWTDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRFKLSTNNTPSPNNNSSSDDSSSDPNNANGIIMVHLNEQQHDLMPMSMCMDSSYSSSSTSSSISSMHQQQAAPMVFSDQYNDPFSILINNNDVPQCLMTQFGGMVEEGHNGNYGIMGSNNKIGLERELSLPPLESDNNAPIIDVKKHNNHFNHHHHSGCFNNAHQKVSKVEELFGFGNNNNNDHHGHQQLHQGENLKIGEWDLEGLMQDMSSFPFLDFQVE* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1919 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Amo08g1919 347 CDD SANT 81 124 IPR001005 -
Amo08g1919 347 CDD SANT 29 73 IPR001005 -
Amo08g1919 347 MobiDBLite consensus disorder prediction 130 155 - -
Amo08g1919 347 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Amo08g1919 347 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Amo08g1919 347 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Amo08g1919 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Amo08g1919 347 PANTHER TRANSCRIPTION FACTOR MYB83 1 347 - -
Amo08g1919 347 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Amo08g1919 347 PANTHER MYB DOMAIN PROTEIN 55 1 347 - -
Amo08g1919 347 Gene3D - 23 79 - -
Amo08g1919 347 Gene3D - 80 153 - -
Amo08g1919 347 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Amo08g1919 347 SMART sant 78 126 IPR001005 -
Amo08g1919 347 SMART sant 25 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1919 Amo-Chr8 31349638 31353159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1919 1 347 MYB Transcription Factor Family AT3G08500 47.826 7.64e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo08g1919 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1919 K09422 - qsu:112038777 327.791