Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1900 ATGGCGGCAAATGATGTATTCCTGAGTTTTAGAGGAGGGACGCGCTACCGATTCTCGGATCATCTGTATGGTGCTTTGCGCCAAAATAGAATCGAGACGTTCAGAGATAATGAAAATCTGAGGGTAGGGGATGAACTGGAACCTATTCTTATGAAGGAAATCGAAAATTGCGAAATGGCAGTAGTGGTGCTTTGTGAGAACTACGCATCTTCGACATGGTGTCTTCGTGAGCTAGTCAAGATCATTGACTGTCACGAAAAGCAAGGGAAGCAGGTTCTGCCAATTATTTACAGAGTGAATCCTTCAGATGTGTGGGATCAGAAGGGTTGCTATGAGACAGCCATGGCTAAACATGAGAACAGGGAAGACCCTCAGAAGGTCAAAGCATGGCGATTAGCTTTGTCCAAAGTGGAAAAGCTAGGATGGGTGCACTGCAAGGAGGACATGTCTGAACCGGAGTTTATCAAGGTTATTGTTAGAGACACCGCTGGCAGATTACCGTTGCCTGAACCAACTGATCATGTAGTTGGACTGGATACTCGCTGTGAAGAAGTAAAATCACGACTAGATATTGAGTCTTATGAAAATGTTTGCATGTTGGGAATTTATGGACCCGGTGGAATAGGCAAAACCACATTGGCCAAATGTCTGTTCGACAAGATCAAGCGGCAGTTTGAAGCTTCATGTTTTCTCGGTAATGTCAGAGAAAAATCTGAAAGTCGTGAAAGTTTAGAAAGTCTGCAAAAGACACTTTTAGATGACATGGGTGAGGAGACAATAACCGAGTTTGGAAGTGAATTTAAGGGAGGATCTGAAATCAAACGAAGACTTCGCCACAGAAGAGTACTTCTAGTTCTTGATGATGTTAATTCAATAACGCAACTGGAATCACTGGCTGGAGGGCATGATTGGTTTGGTTCAGGCAGCAGAATCATTATAACAACAAGGGATACTGATATGGTAGACAAGCATGTGATGGGTGATGTTGTCACCAAGAAATACAAGATGGAGGAGCTAAATGATGATGATTCCTTGGAACTCTTTTGTTGGCATGCTTTCAACAGCAAAGAGCCTGCAGAGAACTTTGAAAATGTTTCAAGAAATGCAATAAGTTATGCAAAGGGCTTTCCACTTGCTTTAGAAGTAATAGGCTCCCATTTAGGGGGTTTTGAAAGTGTGGATAGCTGGGAAGAGGAACTGGACCAGTATAGAATTGATCCAAGTATTCAAGGAGTACTTAAAAGAAGCTACGATAGCTTGTATGAACTTGACCAGAAAACTTTCTTGGACATTGCTTGTTTCTTCAAAGGAGAGAAATGGGAGTATGTTAAAAGGGTATTGAAAGCTTGCGACTTCTACCCAGTTGTTCGAGTGTTCATTAGTAAATGTCTCATCACTGTAAATCAAAATGGCTGCTTGGAAATGCATGATCTAGTGCAAGACATGGGCAAGGAGATTGTAACGAGCGACTCGCCAACAAACCCTGGTGAACGTAGCAGATTATGGTCTCATAAAGACATTCTTCAGGTTCTCAAAGATGACACAGGAAGTAGTTCAATTGAAGGAATAATGCTTCACCCTGCTACCCATGAAGAAGTAGATCATTGGATTACTACTGCCTTTAACAAGATGGAGAACCTTAGAATTTTAATTGTTCGGAATACAATATTTTCAACGGCGCCAAGTTGTCTTCCAAAGAGTTTGCGACTATTGGAGTGGAAAGGATATCCATCAGAGTCGTCCCCACTTGATTTTCATCCCAACAGAATTGTTGACCTCAAGCTACCTCACAGTGCTCTTAAATTGGAAAAGTCATTTCAGATATTTGAGGATTTGACATTTATCAATCTCTCCCAGTGTCAGTCCATTACACAAATTCCCAATGTGTCTGGAGCAAAAAGCTTGAGAGTCTTCATACTAGACAGATGCCATAAGTTGGTAAAGTTCGATGAATCTGTTGGGTTTCTGCCAAATCTTGTGTACTTAAGTGCCTCAGAATGCAGGGTGCTTCGTAGTTTTGTGCCAAGAATGTATTTGCCATCTCTTGAAGTGCTTTCATTTTACTTTTGTAAGAAACTTCAGAACTTCCCAGATGTCATGCAAAAGATGGATAAGCCCTTAAAGATTTACTTGGCAAATACTGCTATCAAAGAGTTCCCAGATTCCATTGGTAATCTTATAGGGCTTGAGCATATAGACATTTCAATATGCAGAGGACTCAAAGATCTACCAAGTAGCTTCTTCAAGTTGCCGAAACTTTTCACATTAACCATGGAGGGATGTTATCATCTTAGAAGATCATTTAAGAGGTTCAAAGAGAGCCATTCCACATTAGATGACTGCCCAAATATAAAGAGACTGAACTTCACTGGTGCCAATCTATCAGATGAAGATCTTCATCCAACTATTCAGGTTCTTCAAAAGCTGGAAGACGTCAATGTATCACACAATGATTTTGTATCCCTCCCAAATTGCATCGAACGATCTGTGCACATAAAATGTCTTGATGTTAGTTATTGTAAGAATCTTAAGACAATTCCAGAACTGCCATCCAGCATTCAAAAAGTAGATGCAAGATATTGCTTATCCTTAACTTCAGAGTCCTCAACCGAACTGTGGTCTAAGGTCTTACTAGAGACCGAAAGAATTCAAATTGTGATGCCAAAAAAGGAGATTCCCAATTTGTTTGACTGCGATTCCAGTGAAGGTATTCCTCTGTTTTGGGCTCGCAGAAAGTTCCCTGTTGTTGCTTTAGCATTCATGTTTGGGAGATCCACTGTGAGCAACAGTGTTGCTGAGACAAGGACTGACATCCTGGGTTTCTTCCCTCAAATTGGTTCATCCTTGTCCTTCATTGTTCGCCTTCACTTGTTCATTGGTGGCAAACAAATATTTCCGAAGGATTCCAAATATTTCAGTGTTGGGGAAGATCATGTGCTACTTTTTGATCTACGAGCTTTGTTCAGTGACGAAGAGTGGCATGATCTTGATGCGTATCTTGGAGTTGGAGACGATGGTTGGAAAGCCATTCAGGTTCAATGTGAATCACCATTAACTCTCAGTCATTGGGGTGTGTATGTGTATAAGCAAGACACAAACTCGGCTGATATTCAATTCAAGAATCCCAATCCCAAATCTCCGTTGTCCGACTTGGTTCCAAAAAGAAGTCCGCATGAACCCCAGGAAAGTATGATGAGACAAGTGGCAGAAAATTTGAATCCAAGAGAATTACTTGGTGACTATTTGCCTCTTGTGGAGTTAACAGAAGTTCCCTCTTTTACATCGGCATTGCTGAGATCGTTGAGGACTGGTAAGGCTGAAGCAACAAGGCCGGAATCTTCGGCCTATGGTGCAAGCTTAAAGCAGGAACATGAAGAATCTAATTGGAATGTTTCGAGGGTGATGGACATGATAAAGGATGATGTGCCTACACATATTGCTGATGCATACTCTAATGAAATACGAGAAGGACGGCGATTTGTCGAAGAACTGATGAGGGCACGCATGGAATTGTTGAAGGAAAAGGGACAAGAGAGGATGGATATTGATATGGCAATCGTTTTAGAGCAACCGCGGTCTGGAAGACCTCCGTCCCGTCGTTATTGGGGAAGGCTGCACATAAAGTATGAAGAGATAACCGCGAAAGCAATTGTGAGGAAGACAACCCAACTAGCATGGCGAGATTGGAATCCCGGCCGTACAACAACAAAAGAGAAGGCAACCGCTGTTCTCTTGAAATGCACGGGGCAAGGGGAATCGTCAGAAGAAGAAAATAATGATCCTGTGTTGGCAGAATTATTAAGCCAGATAGAGGAAGATGCTATGCGCTTCAATACGTCATATGGGAAGATGAAGGCATGTATTATCTTAACTGACGATGCTTATGCTCTCATTTCTGAAGAATATGTACCGGAGTTCATGCTTATCAGAGGAAAAGAAAATGCAGAAATAAAAGGGATGTCACAATGGGGAGCGTTAGAATTGTTGATATATGGATTTATGAGAGCATCAGGAGAAAATACGTTTGGATCGGTAGAGTCCGAACCTCGCTTCGAGAAGACACCTTACGGGAAAATAAGGGTGGAGAACTAA 4092 0.4174 MAANDVFLSFRGGTRYRFSDHLYGALRQNRIETFRDNENLRVGDELEPILMKEIENCEMAVVVLCENYASSTWCLRELVKIIDCHEKQGKQVLPIIYRVNPSDVWDQKGCYETAMAKHENREDPQKVKAWRLALSKVEKLGWVHCKEDMSEPEFIKVIVRDTAGRLPLPEPTDHVVGLDTRCEEVKSRLDIESYENVCMLGIYGPGGIGKTTLAKCLFDKIKRQFEASCFLGNVREKSESRESLESLQKTLLDDMGEETITEFGSEFKGGSEIKRRLRHRRVLLVLDDVNSITQLESLAGGHDWFGSGSRIIITTRDTDMVDKHVMGDVVTKKYKMEELNDDDSLELFCWHAFNSKEPAENFENVSRNAISYAKGFPLALEVIGSHLGGFESVDSWEEELDQYRIDPSIQGVLKRSYDSLYELDQKTFLDIACFFKGEKWEYVKRVLKACDFYPVVRVFISKCLITVNQNGCLEMHDLVQDMGKEIVTSDSPTNPGERSRLWSHKDILQVLKDDTGSSSIEGIMLHPATHEEVDHWITTAFNKMENLRILIVRNTIFSTAPSCLPKSLRLLEWKGYPSESSPLDFHPNRIVDLKLPHSALKLEKSFQIFEDLTFINLSQCQSITQIPNVSGAKSLRVFILDRCHKLVKFDESVGFLPNLVYLSASECRVLRSFVPRMYLPSLEVLSFYFCKKLQNFPDVMQKMDKPLKIYLANTAIKEFPDSIGNLIGLEHIDISICRGLKDLPSSFFKLPKLFTLTMEGCYHLRRSFKRFKESHSTLDDCPNIKRLNFTGANLSDEDLHPTIQVLQKLEDVNVSHNDFVSLPNCIERSVHIKCLDVSYCKNLKTIPELPSSIQKVDARYCLSLTSESSTELWSKVLLETERIQIVMPKKEIPNLFDCDSSEGIPLFWARRKFPVVALAFMFGRSTVSNSVAETRTDILGFFPQIGSSLSFIVRLHLFIGGKQIFPKDSKYFSVGEDHVLLFDLRALFSDEEWHDLDAYLGVGDDGWKAIQVQCESPLTLSHWGVYVYKQDTNSADIQFKNPNPKSPLSDLVPKRSPHEPQESMMRQVAENLNPRELLGDYLPLVELTEVPSFTSALLRSLRTGKAEATRPESSAYGASLKQEHEESNWNVSRVMDMIKDDVPTHIADAYSNEIREGRRFVEELMRARMELLKEKGQERMDIDMAIVLEQPRSGRPPSRRYWGRLHIKYEEITAKAIVRKTTQLAWRDWNPGRTTTKEKATAVLLKCTGQGESSEEENNDPVLAELLSQIEEDAMRFNTSYGKMKACIILTDDAYALISEEYVPEFMLIRGKENAEIKGMSQWGALELLIYGFMRASGENTFGSVESEPRFEKTPYGKIRVEN* 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1900 1363 Gene3D Ribonuclease Inhibitor 709 905 IPR032675 -
Amo08g1900 1363 Gene3D Ribonuclease Inhibitor 530 708 IPR032675 -
Amo08g1900 1363 MobiDBLite consensus disorder prediction 1103 1122 - -
Amo08g1900 1363 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 1029 IPR044974 GO:0006952
Amo08g1900 1363 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 138 IPR035897 -
Amo08g1900 1363 Pfam TIR domain 5 162 IPR000157 GO:0007165
Amo08g1900 1363 ProSiteProfiles TIR domain profile. 2 166 IPR000157 GO:0007165
Amo08g1900 1363 Pfam NB-ARC domain 180 404 IPR002182 GO:0043531
Amo08g1900 1363 Gene3D - 163 328 IPR027417 -
Amo08g1900 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 431 IPR027417 -
Amo08g1900 1363 SUPERFAMILY "Winged helix" DNA-binding domain 409 512 IPR036390 -
Amo08g1900 1363 SUPERFAMILY L domain-like 526 910 - -
Amo08g1900 1363 SMART till_3 3 140 IPR000157 GO:0007165
Amo08g1900 1363 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 1029 - -
Amo08g1900 1363 Gene3D - 338 421 IPR042197 -
Amo08g1900 1363 PRINTS Disease resistance protein signature 199 214 - -
Amo08g1900 1363 PRINTS Disease resistance protein signature 276 290 - -
Amo08g1900 1363 PRINTS Disease resistance protein signature 373 387 - -
Amo08g1900 1363 PRINTS Disease resistance protein signature 677 693 - -
Amo08g1900 1363 Gene3D - 2 162 IPR035897 -
Amo08g1900 1363 MobiDBLite consensus disorder prediction 1039 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1900 Amo-Chr8 31023510 31030621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1900 54 772 WRKY Transcription Factor Family AT4G12020 31.776 6.17e-81 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1900 - - adu:107472636 2360.1