Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1888 ATGAGTGTTGTGTATAGTCATGCTTTAAAATACTCCCAAGAAATGGATTCAAACAACACTAATTCTGGATTATTAAGGTACCGTTCTGCTCCAAGCTCAATGCTCACAAGCCTTATGGATAACATCCACCACGGCGGCGGCGGCGGTGGCGGCGGCGACGGTGGCGGCGACGAAGAAGCCTTGAGAACTGAATTGGAAAAGTTGATCTCATCCAACAACAAAAACAAACGTGTTGTGAACAATTCTTCAGAGCATTTGAAGAGAGAAGAAGGCAACAACAATTATAATTACTCTTTTGGGTCTCAGAATCATGTTATTTACCAAAACAACCAGCACTACCATCAAATTCATCAAGGGTTGGCAATGGCATCATCATATAATAATGGTTTTGATGGAACATTATTTGGTGCAACGAACTCAATGGATTCAGAGAATAATAATGATAATGGCACACAAAATAAAATGGGTTCCAATCTCATTAGGCAAAAGAGTTCTCCAGCTGGTTTTTTCTCCAATTATTCAATTGATAATAATGGTACAACAACATCATCAAGAAGTAGTAGTGGATTGCAATGCACTTTGAACTTCTCATCAAGATCATCCTCTTGCTCCAAAAGCCGCATGCCACAAATTGTTGAGAGTGGAAATGAAGGCATGGAATCAAATTGTGTTGAAAATAGAAACCTAATAATAAGGAATGATGATAGTAATAATAATAATAACAATAATGGCAGTACTAAGTGTTATATGCCAAGATTCACTGGTGACGTTTGGGATGCTTCTGAATTCAATTCCTCCAAAAGAGGCACTAACAATGGTGAAATCATGTTTTCCACTTCAAATGCTATGGAAGCTCAGGATGTAGATTTTGGATATCAAAAGGTTGGTTTGACCCACCATTTAAGTCTACCTAGTTCTTCTACCAAGATTGGTGGCATGGAAAAGCTTTTTCAAATTCAAGGATCTGCTCCATGTAAGATTAGAGCCAAAAGAGGATTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACAAGAATAAGTGCAAGAATCAAGAAACTACAAGACCTTTTCCCAAAATCGGACAAGCAAACAAGTACTGCAGATATGTTGGATTTGGCAGTTGATTATATCAAAGGCCTTCAAAAACAAGTCAAGATACTCACAGATACAAGGGCAAAGTGCAACTGTTCAAGTAATTATCAGAAAGAACAATGA 1224 0.3832 MSVVYSHALKYSQEMDSNNTNSGLLRYRSAPSSMLTSLMDNIHHGGGGGGGGDGGGDEEALRTELEKLISSNNKNKRVVNNSSEHLKREEGNNNYNYSFGSQNHVIYQNNQHYHQIHQGLAMASSYNNGFDGTLFGATNSMDSENNNDNGTQNKMGSNLIRQKSSPAGFFSNYSIDNNGTTTSSRSSSGLQCTLNFSSRSSSCSKSRMPQIVESGNEGMESNCVENRNLIIRNDDSNNNNNNNGSTKCYMPRFTGDVWDASEFNSSKRGTNNGEIMFSTSNAMEAQDVDFGYQKVGLTHHLSLPSSSTKIGGMEKLFQIQGSAPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVDYIKGLQKQVKILTDTRAKCNCSSNYQKEQ* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1888 407 Gene3D - 335 405 IPR036638 GO:0046983
Amo08g1888 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 399 IPR036638 GO:0046983
Amo08g1888 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 383 IPR011598 GO:0046983
Amo08g1888 407 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 403 - -
Amo08g1888 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 403 - -
Amo08g1888 407 Pfam Helix-loop-helix DNA-binding domain 339 384 IPR011598 GO:0046983
Amo08g1888 407 SMART finulus 339 389 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1888 Amo-Chr8 30915381 30919522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1888 16 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.848 7.32e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g1888 HLH 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1888 - - gmx:100795896 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2845 18 120657256 120661049 Amo08g1888 08 30915381 30919522 hybridization