Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1885 ATGGACAAGGGACCACCACCTGCCCTCTTTGTTAATGATGGTTCATTCATGGAGAAGTTCAAGCAACTCCAGCAAGAGCAGGAGAAGGAGAAGAATAACAAACTATCAGAGCCTAAACCTATTAAAGTTGTTTCAGGATCTTTGGCTCCTAAAACCTCCATTAGTAGGGTTAATGATACACGGAAAACTTCTCAGGCTGGTTCCAGTGGCAAACTTGCTTTCAGTCTAAAACAAAAGTCAAAGCTGGTTCCACCGCCTGTTAAGTTAGCTGATGATGAAGAAGAAGAAACAGATGCTGGGGATTTTTCAAATGCTGTACAGGCAAAACGCCAAAAAGTTGATCAGGAGGATGGCACTGCACAGCCATCAAGACAACTTGATGTTGCACCCCCAACCCCAAGTGATCCAATGGTGAAGAAAGTTGCTGACAAATTAGCAAGTTTTGTGGCTAAAAATGGAAGACAATTTGAGGACGTTACACGCCAAAAGAATCCTGGGGATACCCCTTTCAAATTTTTATTTGATCCAAGATGTTCTGACTATAAATATTATGAATATCAACTTGCTCAAGAGGAAAAGGCCCTTGCACAGTCCAGGGAACCACAAGCAAATCATAATGTTATATCCTCAGGAGGTACAGGCAGTTCATCGTCTAGACCAACAAATGGCTCTCAGAGATCATCTCAGCAGCATTCAACCTACCAAATCCCTGCTTCTGCTTTATATGAAAGTGCTGAAATATCAAGGGCTTCTGGATCTTCGACTCAGGCATATTCAGCAGGAAGCACTGATGAGCCTAGTGGATCATCAAATGCTGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACATGAAGAGAAGTTGCGACAACCTAAGCAGTCAAAGGATGAGATGCCCCCTCCTGCTTCTCTTCAAGCTTCTAATAAAAAAGGCCATCATATGGGTGATTACATTCCGCAAGAAGAGCTTGAGAAGTTCTTGGCTAGCTGTAATGATGCAGCTGCACAGAAAGCTGCAAAGGAGGCTGCAGAGAGGGCAAAAATCCAGGCTGATAATGTGGGCCACAAGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGTTCCAGGAAGGGTATTGCAGATCCTATAATGGCAGGCAATGTTAAGAAAGATAACTTGGGAGTAGGTGCTATCCAACCTGGGGAGGTGACTCCGGACGATGACATATATGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGCCATAGACCCAATCCTCTGAACAATCCTCGGAAGGCTTATTATTGA 1311 0.4378 MDKGPPPALFVNDGSFMEKFKQLQQEQEKEKNNKLSEPKPIKVVSGSLAPKTSISRVNDTRKTSQAGSSGKLAFSLKQKSKLVPPPVKLADDEEEETDAGDFSNAVQAKRQKVDQEDGTAQPSRQLDVAPPTPSDPMVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDPRCSDYKYYEYQLAQEEKALAQSREPQANHNVISSGGTGSSSSRPTNGSQRSSQQHSTYQIPASALYESAEISRASGSSTQAYSAGSTDEPSGSSNADSLALMEFYMKKAAHEEKLRQPKQSKDEMPPPASLQASNKKGHHMGDYIPQEELEKFLASCNDAAAQKAAKEAAERAKIQADNVGHKLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKDNLGVGAIQPGEVTPDDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1885 436 MobiDBLite consensus disorder prediction 22 37 - -
Amo08g1885 436 Gene3D Surp module 125 198 IPR035967 GO:0003723|GO:0006396
Amo08g1885 436 Coils Coil 17 37 - -
Amo08g1885 436 MobiDBLite consensus disorder prediction 22 140 - -
Amo08g1885 436 Pfam G-patch domain 354 397 IPR000467 GO:0003676
Amo08g1885 436 MobiDBLite consensus disorder prediction 288 315 - -
Amo08g1885 436 SUPERFAMILY Surp module (SWAP domain) 117 192 IPR035967 GO:0003723|GO:0006396
Amo08g1885 436 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Amo08g1885 436 MobiDBLite consensus disorder prediction 246 272 - -
Amo08g1885 436 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 436 - -
Amo08g1885 436 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 436 IPR040169 -
Amo08g1885 436 Pfam Surp module 140 189 IPR000061 GO:0003723|GO:0006396
Amo08g1885 436 SMART G-patch_5 351 398 IPR000467 GO:0003676
Amo08g1885 436 MobiDBLite consensus disorder prediction 197 239 - -
Amo08g1885 436 MobiDBLite consensus disorder prediction 152 174 - -
Amo08g1885 436 MobiDBLite consensus disorder prediction 48 75 - -
Amo08g1885 436 MobiDBLite consensus disorder prediction 195 272 - -
Amo08g1885 436 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Amo08g1885 436 ProSiteProfiles G-patch domain profile. 353 400 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1885 Amo-Chr8 30884557 30890071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1885 349 396 C2H2 Transcription Factor Family AT5G26610 50.000 7.54e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1885 K13096 - gmx:100786213 611.683