Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1875 AAAAGAGAAAAAGCACTGTGCCGCCAAAATACGAACTCTATCACACTCAGAAAAAGCTTCATCGATCGCTTTCGCCATGGCCACCGCCAAAAGCAACAGTTCTATGCCCGTGGAACATGTTTGAAAGGGGAGCTGTGTTGCTTCTCCCATGAGAGAAATGAGGCTTCTTCAGATATTTGCTTGTTCTATCAGAAGGGCTACTGTGCTTATGGCAGTCAATGCAGGAATAGGCATGTCAAACCATCACAGGCATCAGCATCAGCTTCAGCAAATGGACCTGTATCTTTGGTTTCACAATCTGCCATGACTCATAGTGCTGCTAAGGGAAAGTTTACTTGGGTTCGGAAGGCGGATACGAAAGTGTTGTCACCAACTGACAAACACACTAGTAGCTTACAACACAAGAATCAACATTCTCAAGGGACTCATTGTGAAGTTGGTGAATCGAGCGCTCCTGCTATGCTGGATGAGAATTTGTTCTGTGAATTTGATGCGGCCAACTGCACCTCAAGGGATAAGTGTACCAAAATTCATGGAATCCTCTGCTTGTACTGCAGAAAGCCTTGTCTGCATCCAACCAATCTGAAACAAAGGTCGAACCACTTTAAGATATGCAAGGAAAAGGCTGAGATAATGAAGAATAGTCAAGATATAGAATGCAGTGTTTGCCTGGAGCGCGTTCTGCGGAAGCCTAGACCATCTCAGCGCAAGTTTGGTTTGCTATCTGAATGTGACCATCCTTTCTGTTTAGACTGCATCATCAGGTGGCGCAATATGGCCCCAACCAATGCAATGGACTGCCCTGTGTGCCGCAAGCATTCATCTTTTTATGTTCAAAGTGACATTTGGTATGCTACAAAGGAAGAAAAACAGGCAATTATTGACAATTACAAGGCGAACTGCAAGTTGATTGATTGCAAGTATTTTAAATTTGGAACCAGGCAGTGCCCTCATGGAACTAGTTGTATGTATAAGCATGCTGTAAAACCTGTCTTGCGCAAACAGAGGCAAACCAGGCCACAACCTCAAATTGGAGGAGACAATCTCAACGAATATGACATCATGTCTCAGCTCAGTGAATTTGATTTGCATCCTCATGAGTTTTATTCCATCTTGAAAGACATGGAGTGGTTCGATGATATGAGTGCAATGGAGAAGATGGCTTTAGCTGATGAACTGGCTGGTCCTACTTACGGAGATTCACATTTCTTTCCCCAGGATGATTTCTTTGATAGTGATGATGATTTTGATGATGAAGATTTCGATCCTATTGATGCTGCAATATCATCAATTATGATGTCTGGTATGCCAGTATTTGGATTCAGTGATGACGAATACAGCAACAATGAAGCCAGGGATGGCAAAGACAGTGATGGCGAATCCATTGACGATGATTGA 1398 0.432 KREKALCRQNTNSITLRKSFIDRFRHGHRQKQQFYARGTCLKGELCCFSHERNEASSDICLFYQKGYCAYGSQCRNRHVKPSQASASASANGPVSLVSQSAMTHSAAKGKFTWVRKADTKVLSPTDKHTSSLQHKNQHSQGTHCEVGESSAPAMLDENLFCEFDAANCTSRDKCTKIHGILCLYCRKPCLHPTNLKQRSNHFKICKEKAEIMKNSQDIECSVCLERVLRKPRPSQRKFGLLSECDHPFCLDCIIRWRNMAPTNAMDCPVCRKHSSFYVQSDIWYATKEEKQAIIDNYKANCKLIDCKYFKFGTRQCPHGTSCMYKHAVKPVLRKQRQTRPQPQIGGDNLNEYDIMSQLSEFDLHPHEFYSILKDMEWFDDMSAMEKMALADELAGPTYGDSHFFPQDDFFDSDDDFDDEDFDPIDAAISSIMMSGMPVFGFSDDEYSNNEARDGKDSDGESIDDD* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1875 465 ProSitePatterns Zinc finger RING-type signature. 244 253 IPR017907 -
Amo08g1875 465 Gene3D - 24 94 - -
Amo08g1875 465 SMART ring_2 220 270 IPR001841 -
Amo08g1875 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 290 IPR013083 -
Amo08g1875 465 ProSiteProfiles Zinc finger C3H1-type profile. 33 53 IPR000571 GO:0046872
Amo08g1875 465 ProSiteProfiles Zinc finger RING-type profile. 220 271 IPR001841 -
Amo08g1875 465 MobiDBLite consensus disorder prediction 124 143 - -
Amo08g1875 465 PANTHER MAKORIN-RELATED 33 449 IPR045072 -
Amo08g1875 465 MobiDBLite consensus disorder prediction 443 465 - -
Amo08g1875 465 ProSiteProfiles Zinc finger C3H1-type profile. 300 329 IPR000571 GO:0046872
Amo08g1875 465 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Amo08g1875 465 SMART c3hfinal6 300 328 IPR000571 GO:0046872
Amo08g1875 465 SMART c3hfinal6 55 80 IPR000571 GO:0046872
Amo08g1875 465 SMART c3hfinal6 29 52 IPR000571 GO:0046872
Amo08g1875 465 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 33 449 - -
Amo08g1875 465 Pfam Zinc finger, C3HC4 type (RING finger) 220 270 IPR018957 GO:0046872
Amo08g1875 465 SUPERFAMILY RING/U-box 213 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1875 Amo-Chr8 30718382 30721886 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo08g1875 zf-C3HC4 8.4e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1875 K15687 - gmx:100788886 384.8