Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1872 ATGACAGATCCTCAATCCAATTCCTTAGAAGATGATGGATTCTTCAACTTCATGCCTCTCCACCCTCCTCACCACTGTTCTTCATCTTCTTCTCAATCCAATTTGCACCCATTTGCATACTTAAACACAAGATTTGTTAGAACAACAACAACAACAACACATCATCAACAACAACAACAATCTGAAGCTTCTTCATCTTCCTCCGAATATCTTCTTCCTTCAAATTCTAATTCCCCTTCTCTTAAAGAAGCACTTCCTCTCATAAACAAACTAAGCCTCACAAATCACCAACAAAACAACCACAAGGGTGCACTCACATATCCAGATTCTATTAATTACGAGAACGAAGACGAAGACGAAGAAGCGGATAATGAAACTGTGGCTGTTGCACTGCGCATAGGGCTTCCAAGAATGGATACTTCTTATGATCTTCAACCTTCAAGAAAGGAAGAAGTTATGGCTGATGAGAAACAGCAACAAGAACAAGTCAATAATAATGTGTTTTCTGGAAACCCTTTTGAGAGATTCAACAATAACAACAATAACAAGGGTCACTATTGGATTCCCACACCTTCTCAGATTCTAATTGGACCTACACAGTTCTCATGCCCTCTTTGCTCCAAAACCTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAAGGGACCTGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGTTTTTGTTGTGAACAAGGTTGTAAGCACAACATTGACCACCCAAGGGCAAGGCCCTTGAAGGATTTTAGAACCCTCCAAACACATTACAAGAGGAAGCATGGCATCAAACCCTACTTGTGCCGGAAGTGCCGGAAGTCCTTCGCCGTCAAAGGTGACTGGCGGACGCATGAGAAGAACTGCGGCAAGGTTTGGTATTGTTTGTGTGGATCTGATTTCAAGCACAAGAGGTCACTTAAGGATCATATTAGAGCCTTTGGAGATGGACATGGAGCCTTTGGGATTCAGAGCTTGCATGAATTTGAAGATGAAGCTCCCTCAGAAGCTGAACATGATGGGGAGAGTAGTTCTTTGTGA 1095 0.4201 MTDPQSNSLEDDGFFNFMPLHPPHHCSSSSSQSNLHPFAYLNTRFVRTTTTTTHHQQQQQSEASSSSSEYLLPSNSNSPSLKEALPLINKLSLTNHQQNNHKGALTYPDSINYENEDEDEEADNETVAVALRIGLPRMDTSYDLQPSRKEEVMADEKQQQEQVNNNVFSGNPFERFNNNNNNKGHYWIPTPSQILIGPTQFSCPLCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCEQGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYLCRKCRKSFAVKGDWRTHEKNCGKVWYCLCGSDFKHKRSLKDHIRAFGDGHGAFGIQSLHEFEDEAPSEAEHDGESSSL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1872 364 Gene3D Classic Zinc Finger 200 223 - -
Amo08g1872 364 SMART c2h2final6 285 305 IPR013087 -
Amo08g1872 364 SMART c2h2final6 248 280 IPR013087 -
Amo08g1872 364 SMART c2h2final6 201 223 IPR013087 -
Amo08g1872 364 PANTHER ZINC FINGER PROTEIN WIP2 1 358 IPR043584 GO:0003700|GO:0010468
Amo08g1872 364 SUPERFAMILY beta-beta-alpha zinc fingers 269 305 IPR036236 -
Amo08g1872 364 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 358 - -
Amo08g1872 364 SUPERFAMILY beta-beta-alpha zinc fingers 193 223 IPR036236 -
Amo08g1872 364 MobiDBLite consensus disorder prediction 49 81 - -
Amo08g1872 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
Amo08g1872 364 Gene3D Classic Zinc Finger 245 333 - -
Amo08g1872 364 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1872 Amo-Chr8 30682285 30686745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1872 77 356 C2H2 Transcription Factor Family AT1G51220 58.741 1.68e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo08g1872 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1872 - - gmx:100794446 427.943