Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1867 ATGCCAGGAAAACCCGAATCAGACGAATGGCGGGCGAAGCGAAGCCAGCAGATTCAGTTTCAAGCTTCCATTTATGCTCAGCCCTGGTGGCGCGGCGGAGCCGGTGAGAATGCTCCAAAATCATCATCAGTAGATCAGCAGTTGAATGGTTCATCAGCCATGAATGGTGGCACAGTCACAACACAATCAGAGACTAATGAAGTTGTTGGTTTCAATAAACAGATGCAGTCTTTGATTTCTCAATCACTACCTGGAATTGATAACTCAGGTGGAGATGTTACCAAAGAGCACCAGAACATCAAACATGCTTTTTCCTCAACCCCATTTACCATGGGAAAACACCTTGGTCCGAATTCCGAGACTGAAAGCATTGGTCATTCAATTGTTTTAACTTCACAAGCTTATTTTGATGCACATTATGGTGGAGGCTTGACACCCTATGGGCAACAAACTATGATAAACCCTCAGCTGTATGGGATGAACCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAGCCGGTTTATGTCAATGCAAAGCAGTATCATGGTATTCTGAGAAGAAGACAGTCACGTGCTAAGGCCGAGCTCGAAAAGAAAGTGATTAAAGTTAGAAAGCCATATCTTCATGAGTCGCGTCACCTTCATGCTATGAGAAGGGCAAGGGGTAATGGTGGTCGCTTTCTTAATACAAAGAAGCTTGAAGGCAACAACAACAACAGTATAAACCCCTCAATGGAATCCGGAAGCTCCCTTTCCACGGCTACTTTACATTCCAACAATGATCACTATGTTGTGTCGCAGTCCATGGTTCATGACATGGAGAAAATGCAGAATTTCACCATTGGTTTCTATGGTAGCAATGGTCTGTCCTCAATGTACCATTCACAGTTTAATGGAAGAAATGAGGGACATTGCTTTGGTGGAGAAAGGCAAGGCATGCTTATGCATGGAGCCCCAAATGGGGCTATTGAATGA 981 0.4414 MPGKPESDEWRAKRSQQIQFQASIYAQPWWRGGAGENAPKSSSVDQQLNGSSAMNGGTVTTQSETNEVVGFNKQMQSLISQSLPGIDNSGGDVTKEHQNIKHAFSSTPFTMGKHLGPNSETESIGHSIVLTSQAYFDAHYGGGLTPYGQQTMINPQLYGMNHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEGNNNNSINPSMESGSSLSTATLHSNNDHYVVSQSMVHDMEKMQNFTIGFYGSNGLSSMYHSQFNGRNEGHCFGGERQGMLMHGAPNGAIE* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1867 326 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 24 325 - -
Amo08g1867 326 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 24 325 IPR001289 GO:0003700|GO:0006355
Amo08g1867 326 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Amo08g1867 326 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Amo08g1867 326 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700|GO:0006355
Amo08g1867 326 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Amo08g1867 326 MobiDBLite consensus disorder prediction 227 254 - -
Amo08g1867 326 MobiDBLite consensus disorder prediction 39 59 - -
Amo08g1867 326 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Amo08g1867 326 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Amo08g1867 326 Gene3D - 172 233 - -
Amo08g1867 326 MobiDBLite consensus disorder prediction 31 59 - -
Amo08g1867 326 MobiDBLite consensus disorder prediction 232 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1867 Amo-Chr8 30611464 30616912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1867 21 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 40.789 1.24e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo08g1867 CBFB_NFYA 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1867 K08064 - gmx:100782085 365.54