Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1859 ATGGGGAAGAAAAGTAAACTGAAGGAACATAGTGGCAAAGAACATTGTTCCTCGACTCTTTTTGTATCCAACCTGCCATACTCTTTTTCCAACTCCCAGCTTGAGGAGACATTCAGTGAGATTGGACCTGTCAGGCGTTGCTTCATGGTCACTCAGAAGGGGTCAACCCAACATCGTGGCTTTGGTTATGTTCAATTTGCTGTCGAGGAAGATGCTAYCCGTGCTATTGAACTYAAGAATGGTTCATCTGTTGGRGGCCGGAAAATTGCAGTGAAGCATGCAATGCCACGTCCTRCCCGTGAAGAACGACAATCGAAACCAATTCAAGTTGGTKAGACAGAAGATGACCCAAAGTCYAAAAATGATGATAAAGACAGCAAAGATTCTGGAGAAGAAAAAGCTGTTTCAATTTCAAAGGCAGAAGAGGTACAAGTTTCAAATAAACAAAGAAGCTCAAAGAGGCCCATGGAAATGAGAAAAGCAACTCTTTGTAGTGATATAGCAGATGATGGAGGTGGCTCAGAAAAGCAGAGGGTCGCCAGAACTGTTATATTTGGTAGTCTCATAAATTRRGATATGGCTGAAGATGTTCACCGTCAAGCCAAAGAGATTGGCACTGTGTGTTCTATTAAGTACCCCCTTCCAAGGAAAGATATTGAACTGCAAGGTCTCCTGCAAGATGGCTGTGCTTTGGATGCTTCAGCTGTACTCTTTACAAGTGTAAAGTCAGCTCGAGCTGCTGTTATGGCATTACATAAAAAGGAGATCAAAGGGGGAACTGTTTGGGCACGGCAACTGGGTGGAGAGGGTTCCAAGACTCAGAAATGGAAGCTTATCGTCAGAAACCTTCCTTTCAAGGCTGGTGAAAAGGAAATAAGGGATGTGTTTTCCTCTGCAGGGTATGTGTGGGACGTATTTATTCCACACAAGTCAGATACAGGGCTATCCAAGGGTTTTGGATTTGTGAAATTCACCTGCAAGCAAGATGCGGAAAATGCCATTCAAAAGTTTAATGGATCGAAATTCGCAAAACGGCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATTCAAATGCCACTGAAAAAGAACAAGAGACAAAAGATGGAGATAGTAGTGCCACTGAKGACGATGTTGAGKACATTGGTGATGATAACTCTAGTGATGACGATGATAGTGATGAAGAWAACCCTAGTCCCATGGAGAAGGAAGGTGTTCCTCCTGAAGTTGATTTTGATATGGAAGTAGACATTACTAGAAAGGTTCTTAACAACTTGATTGCATCCTCCACAAAAAGAGCATCAGCGCAGAATGATTCTATGTTGCRCAAAGAAAATGAAGAGCCAGAGTCAGAGTCAGKCGAAGATGTYGATAATAAAGGAAATAATGAGTCAGAAAAAGTTTCAGGTGTTTCTAATCCTGAAATTTCCAACATAAGCAATTTATCAAATCCTAAGCAAACAGAAGATGTTGATTTGCAGCGAACAGTTTTCATAAATAATCTTCCTTTTGATTGTGATAATGAGGAAGTGAAGGAACGYTTCTCTGGATTTGGGGAAGTAGAATACTTTGTTCCAGTTTTACACCAAGTCACCAAACGTCCAAGAGGAACTGGTTTTCTSAAGTTTAAAACCACAGAAGCAGCTAATGATGCAATTAAAGCATCAAATGCTGCTTCAGGTATTCTGCTGAAAGGTAGACCATTGAAAGTTTTGAAGGCTCTGGATAAGAAATCAGCCCATAGCAAGGAACTCGAGAAGGCAAAGAATGAGGTTAATGATCATCGCAATCTTTACCTGGCAAAGGAAGGACTCATTCTGGAGGGAACTCCAGCAGCTGAAGGGGTTTCGGCCAGTGATATGTTAAAACGCCAACAGTTAGAAAAGAAAAAGAAGACAAAGCTTCAYTCACCAAATTTTCATGTTTCAAGAACAAGACTTATCATCTACAATGTACCGAAGRCAATGTCTGAAAAAGAACTAAAGAAAGTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTGATTCGGCAGATAAAGTTCTTGAAAGATGCTAAGAAAGGAGGAAAGGTTGTCCATGAACATTTTTCACGTGGAGTTGCGTTTGTTGAATTTTCAGAGCATCAACATGCCCTTGTGGCTCTGAGAGTTCTAAACAATAATCCTGAAACTTTTGGTCCTGAACACCGGCCAATTGTGGAGTTCGCTCTTGATAATGTTCAAACACTGAAACTCCGGAAGACAAGGCTACAATTCCAAAAGCAAGCCTCTCGTGATGACATCGAAGCTAGTGAAAATGGCGTATCCAGCAAAAACGAAGTTGACACACATGTGAAGGACAGGAAACGGAAAACTCGGGAGAGTGGCAAACCAATGAATGATTTGGATAGAAATGGTGAATCAGGTGTTACAGTGGCAAATGGAAACACCCCAGAAGGACACAAATTCAAGAAACAGAAAGGCAAAAAAAGTAGAAAGGCTGAAGAATTACCAGAGAAAGAGAATTTGGATGCCTTGGCCATGAAACCAAAGAAAAACCAAGATGGCCGGAGCCGTGGTCGTGCACAACTTGAAGGTCAAAACCCTTCCATTGACACCAAGAAAYCAACATCAGGAAACAAGGTAGATGTTGGATCAAGAAAAAGGAAGATGCAAAACGAACAAGGAGACCAAAAGGTTTCTAAGAAACGTCCAAAAAAGAATAAACAATCAGTTGGAAAAGACGCGGTAGACAAGCTTGACATGCTTATAGAACAATATAGATCGAAGTTCTCACACAAACGTTCCGAAGGGAATGACGGTGACAAAAAACCATCCAAACAGCTTAGAAAGTGGTTTGATGTATAA 2871 0.4093 MGKKSKLKEHSGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSTQHRGFGYVQFAVEEDAXRAIELKNGSSVGGRKIAVKHAMPRPXREERQSKPIQVGXTEDDPKSKNDDKDSKDSGEEKAVSISKAEEVQVSNKQRSSKRPMEMRKATLCSDIADDGGGSEKQRVARTVIFGSLINXDMAEDVHRQAKEIGTVCSIKYPLPRKDIELQGLLQDGCALDASAVLFTSVKSARAAVMALHKKEIKGGTVWARQLGGEGSKTQKWKLIVRNLPFKAGEKEIRDVFSSAGYVWDVFIPHKSDTGLSKGFGFVKFTCKQDAENAIQKFNGSKFAKRLIAVDWAVPKKIFSSDSNATEKEQETKDGDSSATXDDVEXIGDDNSSDDDDSDEXNPSPMEKEGVPPEVDFDMEVDITRKVLNNLIASSTKRASAQNDSMLXKENEEPESESXEDVDNKGNNESEKVSGVSNPEISNISNLSNPKQTEDVDLQRTVFINNLPFDCDNEEVKERFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTTEAANDAIKASNAASGILLKGRPLKVLKALDKKSAHSKELEKAKNEVNDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQQLEKKKKTKLHSPNFHVSRTRLIIYNVPKXMSEKELKKVCIDAVISRATKQKPVIRQIKFLKDAKKGGKVVHEHFSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKTRLQFQKQASRDDIEASENGVSSKNEVDTHVKDRKRKTRESGKPMNDLDRNGESGVTVANGNTPEGHKFKKQKGKKSRKAEELPEKENLDALAMKPKKNQDGRSRGRAQLEGQNPSIDTKKXTSGNKVDVGSRKRKMQNEQGDQKVSKKRPKKNKQSVGKDAVDKLDMLIEQYRSKFSHKRSEGNDGDKKPSKQLRKWFDV* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1859 956 MobiDBLite consensus disorder prediction 361 421 - -
Amo08g1859 956 SUPERFAMILY RNA-binding domain, RBD 18 262 IPR035979 GO:0003676
Amo08g1859 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Amo08g1859 956 MobiDBLite consensus disorder prediction 769 956 - -
Amo08g1859 956 SUPERFAMILY RNA-binding domain, RBD 272 357 IPR035979 GO:0003676
Amo08g1859 956 SUPERFAMILY RNA-binding domain, RBD 499 728 IPR035979 GO:0003676
Amo08g1859 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 649 763 IPR000504 GO:0003723
Amo08g1859 956 MobiDBLite consensus disorder prediction 386 401 - -
Amo08g1859 956 MobiDBLite consensus disorder prediction 861 881 - -
Amo08g1859 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Amo08g1859 956 Gene3D - 264 385 IPR012677 -
Amo08g1859 956 CDD RRM2_RBM28_like 277 353 - -
Amo08g1859 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 580 IPR000504 GO:0003723
Amo08g1859 956 MobiDBLite consensus disorder prediction 769 802 - -
Amo08g1859 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Amo08g1859 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Amo08g1859 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 561 IPR000504 GO:0003723
Amo08g1859 956 MobiDBLite consensus disorder prediction 87 159 - -
Amo08g1859 956 MobiDBLite consensus disorder prediction 94 138 - -
Amo08g1859 956 Gene3D - 648 744 IPR012677 -
Amo08g1859 956 MobiDBLite consensus disorder prediction 911 956 - -
Amo08g1859 956 Coils Coil 575 602 - -
Amo08g1859 956 MobiDBLite consensus disorder prediction 882 902 - -
Amo08g1859 956 CDD RRM3_RBM28_like 499 578 - -
Amo08g1859 956 MobiDBLite consensus disorder prediction 361 379 - -
Amo08g1859 956 Gene3D - 431 594 IPR012677 -
Amo08g1859 956 Gene3D - 2 109 IPR012677 -
Amo08g1859 956 MobiDBLite consensus disorder prediction 438 492 - -
Amo08g1859 956 MobiDBLite consensus disorder prediction 831 860 - -
Amo08g1859 956 CDD RRM4_RBM28_like 649 747 - -
Amo08g1859 956 CDD RRM1_RBM28_like 19 97 - -
Amo08g1859 956 SMART rrm1_1 277 350 IPR000504 GO:0003723
Amo08g1859 956 SMART rrm1_1 19 92 IPR000504 GO:0003723
Amo08g1859 956 SMART rrm1_1 500 576 IPR000504 GO:0003723
Amo08g1859 956 SMART rrm1_1 650 742 IPR000504 GO:0003723
Amo08g1859 956 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 11 372 - -
Amo08g1859 956 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 499 762 - -
Amo08g1859 956 PANTHER RNA BINDING PROTEIN 11 372 - -
Amo08g1859 956 PANTHER RNA BINDING PROTEIN 499 762 - -
Amo08g1859 956 MobiDBLite consensus disorder prediction 468 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1859 Amo-Chr8 30492175 30499937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1859 20 352 Eukaryotic Initiation Factors Gene Family AT2G36660 24.189 8.59e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1859 K14573 - gmx:100794821 1306.97