Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1839 ATGAGGAAGAAGCTCGATACCCGATTCCCTGCGGCTCGGATAAAGAAGATAATGCAAGCAGATGAAGATGTTGGAAAGATAGCACTTGCAGTTCCTGTTTTAGTCTCTAAAGCTTTGGAGCTATTTTTGCAAGATCTATGTGACCGCACGTATGAAATAACTCTTCAGAGAGGAGCAAAGACCATGAACTCGTTGCATTTAAAACATTGCGTACAAAGCTACAATGTCTTTGATTTTCTGAGGGATGTTGTCAGTAGGGTTCCTGACTACGGCCATGGCCATGGCCATACAGAAGCTGGATCCGATGATCGGGTCATTTATAAAAGAAGGAAGGCTGCTACTGATGATTGTAACGACAGTGATGAAGAGGCTAAGAGGAGCAAAATGCATGAGTTGGGCCACACTGGTAGTACTGGAAGGGGAAGGGGCCGAGGTAGAGGAAGGGGCCGTGGCCGAGGAGCTAGAACTGCAGAAAGAGAGGCATATCGTCCGGAACCTGAAATTGAGCCTCGTGCTTCTATTCCGGAGAGCAGTCAACATAATAGTAGCACAACTGCGGCAATATTTGATGGTTCACAGTCTGAGGACTTACCAAAGGAGAATATCGCTGCCGTCGCTACTGAAAGCTCCGAGGCACTCCCAAATGCTGTTCCCAGTTCTGACACAAACCAAAACCTGGACAAAAACGATAGCACAGCAGCAGCAATTGGTGCCTCATTACCTGAATCTGAAAAAGAGAGCAAGCACGAGGAAATTCCGGGCTGGTCCCTTTCTGATGTGGACAAGATGGCCATCGACTCAATGCAGCTTGCGCAGCTCGGTGGTCAACTAGAAGTTGATGAAGAAGATTATGATGAGGAAGGGTAA 867 0.4729 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHTEAGSDDRVIYKRRKAATDDCNDSDEEAKRSKMHELGHTGSTGRGRGRGRGRGRGRGARTAEREAYRPEPEIEPRASIPESSQHNSSTTAAIFDGSQSEDLPKENIAAVATESSEALPNAVPSSDTNQNLDKNDSTAAAIGASLPESEKESKHEEIPGWSLSDVDKMAIDSMQLAQLGGQLEVDEEDYDEEG* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1839 288 MobiDBLite consensus disorder prediction 174 191 - -
Amo08g1839 288 MobiDBLite consensus disorder prediction 113 260 - -
Amo08g1839 288 MobiDBLite consensus disorder prediction 151 170 - -
Amo08g1839 288 PANTHER HISTONE SUPERFAMILY PROTEIN 1 287 - -
Amo08g1839 288 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 287 - -
Amo08g1839 288 MobiDBLite consensus disorder prediction 212 232 - -
Amo08g1839 288 MobiDBLite consensus disorder prediction 113 137 - -
Amo08g1839 288 MobiDBLite consensus disorder prediction 242 256 - -
Amo08g1839 288 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Amo08g1839 288 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Amo08g1839 288 SUPERFAMILY Histone-fold 4 97 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1839 Amo-Chr8 30198160 30201507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1839 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.056 4.82e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo08g1839 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1839 K21752 - gmx:100814712 388.652