Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1792 ATGAACATGTTAGGCCTCAGAGACCTAGTTTTCATAGCACCAACCCATTCCCTTCACCATCATCACCAACAAGGCCAAACCATAATCTCACAAGACCACCACCATAGCCATGGCCATACCAACAACAACAACGACAATAACAATAACAATAACAATAACAATAACCTTCCTTTTCCTCCATCATCACTCAGCGTTGGCCTTGGAATCTTCCCCCTCATAACCGCCACACCCTGCATGCCACAAGATAACAATAACAACGTTCACCATGACCAACAACACCTTCTTGTTGGGACCAACACCACCACCGCCACCACCACCACCAATAACAGTTACTGGAACCTCAAGATGTGTCCTGAAGTTTCAGAACACGACGGCGGCGGTGGTGAGGGAAACAACAACGGAGATGGTGGTGGTAGTAGTATCTACGGCCCTGAATTCAGGGTGTGCCAGGATTGTGGCAACAGGGCAAAGAAAGATTGCAGTTACAAGAGGTGCAGGACTTGTTGCAAGGGGCGTGGATACGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGTGTCGCATCGCCGGGCACGTGATATCACCGTTGTTGCTGCTGCTGCTCTTGGGGCTAATAAGAGGCTTAGAGCTTTTGGGTCATCACAAACAACTACAACTACTAATACCTCTCATAGTTCAACTTCTAATGCTACCACAACTAAGAGTTTGGATTCTACCTCTTGTCACCAGGATGCTGAATTCAAACAATCTTTACCGAGCCACGTTCGAGCCCCGGCGGCGTTTAGGTGCCACAGAGTGTCTGCTATTGGCAATGGGGAAGATGAAATTACATACTTGGCCACTGTCCACATTTGTGGCCATGTGTTCAAAGGGTTTCTTTATGATCAAGGTGCTGATGGCAAGAATGATGAAGTTCCTTGTGTTTCAGTGTTGCAACTTGGAAACAGTGGGAAGAACAACAACAATGGGGAATGTTCCTCTCCAACTCCAATTGGGGTTCCAATCAGTGCCTACCCTGCTTCTGCTTGCTGA 1035 0.4802 MNMLGLRDLVFIAPTHSLHHHHQQGQTIISQDHHHSHGHTNNNNDNNNNNNNNNNLPFPPSSLSVGLGIFPLITATPCMPQDNNNNVHHDQQHLLVGTNTTTATTTTNNSYWNLKMCPEVSEHDGGGGEGNNNGDGGGSSIYGPEFRVCQDCGNRAKKDCSYKRCRTCCKGRGYDCSTHVKSTWVPVSHRRARDITVVAAAALGANKRLRAFGSSQTTTTTNTSHSSTSNATTTKSLDSTSCHQDAEFKQSLPSHVRAPAAFRCHRVSAIGNGEDEITYLATVHICGHVFKGFLYDQGADGKNDEVPCVSVLQLGNSGKNNNNGECSSPTPIGVPISAYPASAC* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1792 344 MobiDBLite consensus disorder prediction 41 59 - -
Amo08g1792 344 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 148 190 IPR006510 -
Amo08g1792 344 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 45 344 - -
Amo08g1792 344 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 35 - -
Amo08g1792 344 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 252 298 IPR006511 -
Amo08g1792 344 MobiDBLite consensus disorder prediction 17 59 - -
Amo08g1792 344 Pfam Domain of unknown function (DUF702) 148 300 - -
Amo08g1792 344 MobiDBLite consensus disorder prediction 214 236 - -
Amo08g1792 344 MobiDBLite consensus disorder prediction 26 40 - -
Amo08g1792 344 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 45 344 IPR007818 GO:0003700|GO:0006355
Amo08g1792 344 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 35 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1792 Amo-Chr8 29601563 29603503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1792 1 329 C2H2 Transcription Factor Family AT5G12330 36.686 9.63e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo08g1792 DUF702 3e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1792 - - adu:107462849 605.134