LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo08g1791	TCTACAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCGTTCATCGAAGCTTAGGAGTCCACATAACAAAGGTTCTATCGTTGAAGCTCGATGATTGGACAGATGAAGAAGTTGATACATTGCTCAATTTTGGTGGAAACACAACACTAAACAAGAAGTATGAAGCTTGCCTCCCACCTAACATTAAAAAACCGGACCCAAATTCATCAATTGAGGAACGCTCTGATTTTATAAGGCGAAAGTATGAGTTGTTGCAATTTACTGGTGGTGACAACAAATCACAACCTTGTCAAGCGAGTAATTCATCCCCGGTTCAAAGTGATTCTCCTTCATTCAGTGATTCTCCGATGGACAAGAAGCAACACGAAAAACATAAACATCGAATTGGGAATGCATTGCGCCATAATTGGGGAAAGAAAGATCATGAGAATAAAGCTCCAAAGAAAACCAACTCATCATTGGCAGGTATGGTTGAATTTGTTGGATTAATTAAGGTTAATGTGGTAAAAGGCACTAACTTGGTTGTTCGAGATGTAGTGTCTAGTGACCCTTATGTTGTCCTTTCTTTGGGTGACCAATCAGTAAAAACACGTGTCATAAAGAAGAGTTTGAATCCAGTGTGGAATGAAAGCCTAATGTTGTCAATTCCAGAAAATATTCCTCCCCTTAAAGTGTGTGTATATGATAAGGACAAATTTTCAAACGATGATTTTATGGGTGAGGCTGAAATAGACATTGAACCTCTAGTGATAGCTACAAAAGAATATGAGGAGTCTAAAAGCTATGAGCATATGCAACAACATGGGGGATGTGGTTCAACCACAGAAAACACTTCCATTTGTGAAGATGATGCTAATGCCAATCACAAAGGAGAGATGAAACAACATTTCTCAATTAGGTTACAAAATGTTGAGAGTGGTGTGTTAGAGATTGAGATTGAATGTGTTCCTCTTACTCAATAA	966	0.382	STSLGVFICIKCSGVHRSLGVHITKVLSLKLDDWTDEEVDTLLNFGGNTTLNKKYEACLPPNIKKPDPNSSIEERSDFIRRKYELLQFTGGDNKSQPCQASNSSPVQSDSPSFSDSPMDKKQHEKHKHRIGNALRHNWGKKDHENKAPKKTNSSLAGMVEFVGLIKVNVVKGTNLVVRDVVSSDPYVVLSLGDQSVKTRVIKKSLNPVWNESLMLSIPENIPPLKVCVYDKDKFSNDDFMGEAEIDIEPLVIATKEYEESKSYEHMQQHGGCGSTTENTSICEDDANANHKGEMKQHFSIRLQNVESGVLEIEIECVPLTQ*	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo08g1791	321	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	1	96	IPR001164	GO:0005096
	Amo08g1791	321	CDD	ArfGap	1	83	-	-
	Amo08g1791	321	PANTHER	CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN	1	321	-	-
	Amo08g1791	321	MobiDBLite	consensus disorder prediction	90	115	-	-
	Amo08g1791	321	Gene3D	Arf GTPase activating protein	1	96	IPR038508	-
	Amo08g1791	321	PRINTS	HIV Rev interacting protein signature	5	22	IPR001164	GO:0005096
	Amo08g1791	321	PRINTS	HIV Rev interacting protein signature	26	47	IPR001164	GO:0005096
	Amo08g1791	321	Pfam	C2 domain	164	253	IPR000008	-
	Amo08g1791	321	MobiDBLite	consensus disorder prediction	90	150	-	-
	Amo08g1791	321	MobiDBLite	consensus disorder prediction	135	149	-	-
	Amo08g1791	321	Gene3D	C2 domain	161	318	IPR035892	-
	Amo08g1791	321	SUPERFAMILY	ArfGap/RecO-like zinc finger	1	89	IPR037278	-
	Amo08g1791	321	SMART	C2_3c	164	259	IPR000008	-
	Amo08g1791	321	Pfam	Putative GTPase activating protein for Arf	1	89	IPR001164	GO:0005096
	Amo08g1791	321	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	1	321	IPR044518	GO:0005096\|GO:0005543
	Amo08g1791	321	SMART	arf_gap_3	1	96	IPR001164	GO:0005096
	Amo08g1791	321	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	160	256	IPR035892	-
	Amo08g1791	321	ProSiteProfiles	C2 domain profile.	146	261	IPR000008	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo08g1791	Amo-Chr8	29556483	29561303	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo08g1791	1	321	C2H2 Transcription Factor Family	AT4G21160	44.237	5.19e-89	268

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo08g1791	K12486		-	gmx:100789552	410.223