Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1789 ATGGGTATGTCTGCTGCGGCACAGTTCCATGTTTTGGCTGTTGATGACAGCCTAATTGATAGAATGTTGATTGAGAGGCTCCTCAAAACCTCTTCATTTCATGTTACAACAGTGGACTCTGCCATTAAGGCTTTACAATACCTTGGTATGGTTGAAGATAAACTAAAGAGTTATGAGACACCTGAAATTCATCAGGATGCGGAAGTTAATGTAAATCTGATCATAACAGATTACTGTATGCCAGAAATGACTGGCCATGATTTGCTAAGAAAAATTAAGGAATCAAATTCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCATCAAGGATCAATAGATGCTTGGAAGATGGGGCTGAAGAATTCTTTCTGAAACCAGTTCAACAATCAGATGTGAACAAGCTGAAACCCCATTTATTGAAATCAAGATCCAAGGAAGAAGAGGAAACCCAACCCAGCAACAATAACAAGAGGAGA 489 0.3906 MGMSAAAQFHVLAVDDSLIDRMLIERLLKTSSFHVTTVDSAIKALQYLGMVEDKLKSYETPEIHQDAEVNVNLIITDYCMPEMTGHDLLRKIKESNSLKDIPVVIMSSENVPSRINRCLEDGAEEFFLKPVQQSDVNKLKPHLLKSRSKEEEETQPSNNNKRR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1789 163 CDD REC_typeA_ARR 11 139 - -
Amo08g1789 163 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 157 IPR045279 GO:0009736
Amo08g1789 163 SUPERFAMILY CheY-like 9 148 IPR011006 -
Amo08g1789 163 MobiDBLite consensus disorder prediction 138 163 - -
Amo08g1789 163 Pfam Response regulator receiver domain 11 136 IPR001789 GO:0000160
Amo08g1789 163 PANTHER RESPONSE REGULATOR RECEIVER DOMAIN PROTEIN 3 157 - -
Amo08g1789 163 SMART REC_2 9 143 IPR001789 GO:0000160
Amo08g1789 163 MobiDBLite consensus disorder prediction 140 163 - -
Amo08g1789 163 Gene3D - 10 163 - -
Amo08g1789 163 ProSiteProfiles Response regulatory domain profile. 10 144 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1789 Amo-Chr8 29538417 29540129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1789 1 152 Response Regulator Gene Family AT3G57040 63.694 2.99e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo08g1789 Response_reg 1e-18 CL0304