Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1773 ATGCCATCATCACCCTCCATCTCCTTTGTTCTCTTCCTTTTATTCCTCACTGTACCATTACTACAAGCCCAACAACAATCTCCATCAAAAAACGCCCCTCCTCCTCCCCCTTCATTGCCTCCGCCTGCTTCGGCTCAAAAACATTTTCCTCCTCCACCTCCACCTCCACTTACTTTTTCGACTCGAAAAGTTGCTCCACCTCCTCCTCCTCCTTCACTGCCTCCACCTGCTTCGGCTCTAAAATATTTCCCTCCTCCACCTCCTCCTTATTTTCCTCGAAAATATGCTCCTCCTCCTCCCCCTTCCTCTTCCTCTTCGGCTCCAATGCTTACCCCTCCTTCTCCGCCTTCAAAACACTCCCCTCCTCCGTCTCCACTACCACCTTCTACCTCTTCAGCTCCTCCCTCTCCTTCTCCAGTTTCTCCTCCTCCTTCTCCTTCCTCCAAAGAAGCCTGCAAGTCTACACTGTACCCAAAACTCTGCCGCTCCATTCTAAAATCCATTCGCTCGTCACCATCCGATCCATACAACTTAGGGAAATTCTCCATCAAACAAAGCCTCAAAAAGGTAAAGAAGCTGGCAAAAGCGTTCGATGACTTCCTCCACCACAAGTCGTCTTCTTACCTCAACCAAGCCGAGATCTCGGCTCTCGACGACTGCCGCGACCTCAACCAACTCAACGTAGACTACCTCCAAACCGTCTCCGACAACCTCAAATCTGCGACCTCGTTAGACAGCAATGGAAATGAGGAATTGGTGGAGGACATCGAAACGTATCTGAGTGCGGTGGCTACTAACCACTACACTTGCTATGATGGGTTGGTGGCGGCGAAGAGTAACATCGCGGAGGCGCTGGCGGTGCCTCTGAACGATGTGAAGCAACTGTATAGTGTGTCGCTTGGGTTGGTTACGGAGGCTCTGAACAAGAATAGGAAGAAGCATAAGACAAGAAAGCATGGTCTCCCTACTAATGACTACAAATTTCTTCACACAACAACTAATAATAGTTGCAAAGAATCATCATTCAATTGTACAAGGAAAAGCGAAAGGATTCTTGAGGAAAGCAATAACAACAGCAAAGGAATTCTACTGAACAGCTATGTGATTGTGAGCATTGATGGGACAGGGAACTTCACTTCCATTGGAGACGCCATTGCTTTTGCTCCGAACAATTCAAGAGCAGAAGATGGGTATTTCCTTATCTATGTCACAGAAGGGTGCTACGAGGAATATGTCACTATCCCCAAACAAAAGACTAACATTTTGCTTGTTGGAGATGGTATCAATAAGACTGTTATCACAGGGAATCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCAACTTTTGCTGTTTCTGGAGATAGATTCATGGCAGTGGATATTACATTCAGAAACACAGCTGGCCCTGAGAAGCACCAAGCAGTAGCACTTAGAAGCAACGCTGACCTCTCCACCTTCTACCGATGCAGTTTTGAAGGATATCAAGACACACTCTACGTTCACTCTCTCAGACAATTTTACAGAGAATGTGACATCTATGGAACGGTAGACTTCATCTTTGGTAACGCCGCCGTAGTTTTCCAGAGCTGCAACATCTACGCAAGAAAGCCAATGACTAACCAGAAAAACTCCGTCACCGCGCAAGGCCGGACGGATCCAAACCAAAACACCGGAATCTCAATCCAAAATTGCACCATCCAGGCCGCCCCTGACTTGGCGGCCGACGTGGAATCCACGCCGAATTACTTAGGTAGGCCGTGGAAAGAGTACTCGAGGACGGTTTATATGCAGTCATATATTGGTGCCTTGATTAGTCCTTCTGGATGGTTAGAGTGGAATGGGACCGTTGGGTTAGACACACTCTTCTATGGTGAATTTAATAACTATGGTCCTGGTGCTGGTACAAGTAACAGAGTAAAATGGAAGGGTTACAACTTGTTGAATGCTACTCAAGCTTGGAATTTTACTGTTCTTAATTTTACTTTGGGAGATACATGGCTTCCTTACACTGATATACCATACACTTCAGGCCTAGAAGATTAA 2049 0.4646 MPSSPSISFVLFLLFLTVPLLQAQQQSPSKNAPPPPPSLPPPASAQKHFPPPPPPPLTFSTRKVAPPPPPPSLPPPASALKYFPPPPPPYFPRKYAPPPPPSSSSSAPMLTPPSPPSKHSPPPSPLPPSTSSAPPSPSPVSPPPSPSSKEACKSTLYPKLCRSILKSIRSSPSDPYNLGKFSIKQSLKKVKKLAKAFDDFLHHKSSSYLNQAEISALDDCRDLNQLNVDYLQTVSDNLKSATSLDSNGNEELVEDIETYLSAVATNHYTCYDGLVAAKSNIAEALAVPLNDVKQLYSVSLGLVTEALNKNRKKHKTRKHGLPTNDYKFLHTTTNNSCKESSFNCTRKSERILEESNNNSKGILLNSYVIVSIDGTGNFTSIGDAIAFAPNNSRAEDGYFLIYVTEGCYEEYVTIPKQKTNILLVGDGINKTVITGNHSVIDGWTTFNSSTFAVSGDRFMAVDITFRNTAGPEKHQAVALRSNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPMTNQKNSVTAQGRTDPNQNTGISIQNCTIQAAPDLAADVESTPNYLGRPWKEYSRTVYMQSYIGALISPSGWLEWNGTVGLDTLFYGEFNNYGPGAGTSNRVKWKGYNLLNATQAWNFTVLNFTLGDTWLPYTDIPYTSGLED* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1773 682 ProSitePatterns Pectinesterase signature 2. 514 523 IPR033131 -
Amo08g1773 682 Gene3D - 365 682 IPR012334 -
Amo08g1773 682 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 150 304 IPR035513 -
Amo08g1773 682 Pfam Pectinesterase 368 665 IPR000070 GO:0030599|GO:0042545
Amo08g1773 682 PANTHER PECTINESTERASE 141 680 - -
Amo08g1773 682 MobiDBLite consensus disorder prediction 23 152 - -
Amo08g1773 682 Gene3D Invertase/pectin methylesterase inhibitor family protein 149 306 IPR035513 -
Amo08g1773 682 SMART PMEI_2 143 302 IPR006501 GO:0004857
Amo08g1773 682 Pfam Plant invertase/pectin methylesterase inhibitor 149 301 IPR006501 GO:0004857
Amo08g1773 682 TIGRFAM PME_inhib: pectinesterase inhibitor domain 141 304 IPR006501 GO:0004857
Amo08g1773 682 CDD PMEI-like_3 151 305 - -
Amo08g1773 682 SUPERFAMILY Pectin lyase-like 365 679 IPR011050 -
Amo08g1773 682 MobiDBLite consensus disorder prediction 29 146 - -
Amo08g1773 682 PANTHER PECTINESTERASE 141 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1773 Amo-Chr8 29284446 29289568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1773 105 680 Carbohydrate Esterase AT3G10720 56.833 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1773 K01051 - gmx:100816503 808.905