Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1743 ATGGCGCTATGGATGGAAAATCGTTCAGAGCCACTCACCGAAGCCGAGAAGGCAGACCTTGAAGCCATTGCTGCCATCAAAGAATCTGCAGCCATTGAACTCAAGGAAAAGGGTAACGAGTATGTGAAGAAGGGTAAGAAGCATTACTCTGAAGCAATTGATTGCTACACAAGGGCAATTAATCAGAAAGCATTGAATGATTCTGAGAGCTCTGTTCTTTTTGCGAACAGGGCGCATGTCAATTTGCTTCTTGGRAACCAYMGGCGTGCCCTCTCTGATGCTCAACAAGCACTCAACTTGTCCCCCTCCAACATAAAGGCAATTTATAGAGCTGTCAAAGCATCTCTATCACTGAATTTATTGGCTGAAGCACAAGAGTATTGCCGAAAGGGTCTTAAGTTGGACCCCAATAATGAGGAACTTAAGAGGCTTGACCGACAGATTCGTACGAAGATATCTGAGAAGGAGAAGCTTGAGGCTGAAGTCTCTAGAGCCATATCGGAGGCAGAAGAACTTGTGTCTGCAATAGAAAATAGAGGATTGAAGATTGGAAAGGCAATGTATCGAGAACTCACCGGGTTAAAGAAACCGGTGTTARACAAAAATAATATCCTTCATTGGCCTGTCCTTCTTCTGTATGCAGAGGTTATGTCCAGTGATTTCATTGAGGATTTCTGTGAGACTGACATGCTTTCAGTTCACCTTGATATCATGTTTTCAGCAGACCAACCACTCCCATGGGATGTTGAAAACAATTACAAACGTGATTTTGTTGAATTATACTATGAGGCTGGCTCTGGAGTTCGTCTATCAAAGGAGAAACTTCTTCATTGTTTATTAGAGGGAACTGCAGCTTCTCATGTTGRTGATGAAGAGAAAGATGCRGTTGAGGATTTTAAACACACTGCAGGTTCCCCAAAATGGATCAAAGTAAATGAGAAGAAAACCCTCCAAGATATCCTCAAAGAGCCTAATTTCGTAATCCCCGAAATCCCAGTCTTCTATGTTGTTTCCAAGCAATCCAACTTTTATAGCAAGTTCAAATCTGGAAAATGGGCTCCTCCAAGCATATGA 1074 0.4209 MALWMENRSEPLTEAEKADLEAIAAIKESAAIELKEKGNEYVKKGKKHYSEAIDCYTRAINQKALNDSESSVLFANRAHVNLLLGNHRRALSDAQQALNLSPSNIKAIYRAVKASLSLNLLAEAQEYCRKGLKLDPNNEELKRLDRQIRTKISEKEKLEAEVSRAISEAEELVSAIENRGLKIGKAMYRELTGLKKPVLXKNNILHWPVLLLYAEVMSSDFIEDFCETDMLSVHLDIMFSADQPLPWDVENNYKRDFVELYYEAGSGVRLSKEKLLHCLLEGTAASHVXDEEKDAVEDFKHTAGSPKWIKVNEKKTLQDILKEPNFVIPEIPVFYVVSKQSNFYSKFKSGKWAPPSI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1743 357 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Amo08g1743 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 353 - -
Amo08g1743 357 SUPERFAMILY TPR-like 22 158 IPR011990 GO:0005515
Amo08g1743 357 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Amo08g1743 357 SMART tpr_5 71 104 IPR019734 GO:0005515
Amo08g1743 357 SMART tpr_5 31 66 IPR019734 GO:0005515
Amo08g1743 357 SMART tpr_5 105 138 IPR019734 GO:0005515
Amo08g1743 357 Coils Coil 141 179 - -
Amo08g1743 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 353 - -
Amo08g1743 357 Gene3D Tetratricopeptide repeat domain 24 180 IPR011990 GO:0005515
Amo08g1743 357 Pfam Cns1/TTC4 Wheel domain 202 267 IPR044059 GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1743 Amo-Chr8 28812063 28815961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1743 30 160 Calmodulin-binding Proteins AT3G25230 31.690 2.48e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1743 K24927 - gmx:100783179 573.163