Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1741 ATGCCTAGGATTTTTGGTTTTATCCGAAGGGCCTTTTGGTCAATGATGATATTATTACTCTTTATGATCCCCATTATGGGGGTTATATCTCTATGCACGGGAGGTGGATCTAAACATGGTGATTCTTATGTTTATTTTGAATTGATCATCGGTTGTTTTGGTTATTTTTTTATATTTCTGAATTTGAGGGATAATTCAGATGAAAATAATGCTATTGATGAGAACACAATGGTATTGATTCCTTTGTTTGATGATTATGGAAATCGTTTTATGATGCTTCAACTACCTATCGAAGAAGACACACAAGAACTAACAGAATTACCTCCAAATGTTTGGCGCACTTTGGGGCCGTTGCCGCCAGTTAAGAGCTACATCAAGGAGAAAGATAAGGAAGAAGAGGCCAACAGATCGGCCGCTCAGAAAGTTAATTATTGTTCTGTTTGTATAGAAGAGTTCAAGAACGGAGAGTTAATTCAACCGTTTGGAGTTTGTGTGCATGAGTTCCATTCAACTTGTATAAACTCTTGGTTGCAACGTGGAAAAACTAATTGTCCAATTTGTCGTACTGATTTAGAATTTTAG 582 0.366 MPRIFGFIRRAFWSMMILLLFMIPIMGVISLCTGGGSKHGDSYVYFELIIGCFGYFFIFLNLRDNSDENNAIDENTMVLIPLFDDYGNRFMMLQLPIEEDTQELTELPPNVWRTLGPLPPVKSYIKEKDKEEEANRSAAQKVNYCSVCIEEFKNGELIQPFGVCVHEFHSTCINSWLQRGKTNCPICRTDLEF* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1741 193 Pfam Ring finger domain 144 188 IPR001841 -
Amo08g1741 193 ProSiteProfiles Zinc finger RING-type profile. 145 188 IPR001841 -
Amo08g1741 193 SUPERFAMILY RING/U-box 128 191 - -
Amo08g1741 193 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 118 191 - -
Amo08g1741 193 PANTHER OS06G0666500 PROTEIN 118 191 - -
Amo08g1741 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 192 IPR013083 -
Amo08g1741 193 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1741 Amo-Chr8 28798007 28798927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1741 145 189 C3H Transcription Factor Family AT4G00305 44.444 1.15e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1741 - K19041 adu:107470824 157.147