Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1727 ATGGGGAAAGCATGTAGTTGGTCTCTTATATCCATTTTCATTATTATCCTTTCATGCTGTGTGTCTGAAATACATGGAAACAAACAAGGTCGGGCTCTGGACAAGTTTTTCAAGGCCAAGTTCAAAGCAGGATCACAAATCAACAGGGGGCACTTCGAGGCACCAGAGATTGTGCATGAAGCCGCCACTGCCACCGCCGCCGATGTGGGTTCTCAGGCGGGCCTGAAAGAGAAAGACAGAATTGTGAGTTTGCCGGGGCAGCCAAAGGTGAATTTCAGTCAGTATGGAGGGTATGTCACGGTTAACCATTTGGCAGGACGTGCCTATTATTATTACTTTGTGGAAGCTCAGACTTCTAAGGAAACAAAGCCCCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCCCTTGCCTATGGAGCAATGCAAGAACTTGGACCCTTCCGAGTAAACAGTGATGGACGAACACTTTACCTAAATAGATATCGTTGGAATCATGCTGCAAATGTTTTGTTCCTGGAGTCACCAACTGGAGTAGGATTTTCTTACTCAAACAGATCATCAGATTATGCTGATTATTATAATGATGACAAGAAAACAGCAGCAGATAACTATGTATTCTTGGTGAATTGGTTGGAGAGGTTTCCTGAATATAAGAAGAGGGATTTCTTCATTGCTGGGGAGAGTTATGCAGGGCATTATGTTCCTGAACTTGCACATACTATTCTCTACCATAACAAGAAGGCCAACAAAACAATCGTTAACCTTAAAGGAATACTGATTGGGAATGCAGTGATAAACGATGAAACAGACGATGCTGGAATGTACGATTTTCTTGCAAGCCATGCAATAATCTCAGACAATGTTGCACACGATATCAACACATATTGTGATCATAAGTCTTCAGATCCTTCCGATCAGCGTAGCCTCCAGTGCGATACAGCATGGGATGCATTTTATAGGGCTACTCGTTTCATTGATATCTACAACATCTATGCTCCACTTTTTTGCCGCAATGAAAGCCTCACAAAACGGCCCAAGAAGCACTCTCTTGTTGCTGATCCGTGCAGTGATAATTATGTGATTGCCTATCTTAACCGGGCAGAGGTTCAAGAGGCCATCCATGCGAATGTTACCAAACTCAAGTATGACTGGCAACCTTGCAGTGGTGTCATGGGCAGGTGGGGTGACTCCCCTTCAACCATGCTTCCCCTTCTACATGAATTCCTTCACAACGGACTAAGGGTCTGGATTTTCAGTGGTGACATAGATGGAAGGGTGCCTGTTACTTCAACAAAGTATTCACTTAAGAAGATGAACCTTTCTGTTGAAACTGCTTGGCATCCTTGGTATCTGTTTGCAGAGGCTGGTGGGTATACAGAAGTGTACAAGGGAGGCTTAACTTTTGCGACAGTAAGAGGAGCAGGGCATCAAGTGCCAAGCTACCAGCCAGCAAGAGCCTTTTCTCTCCTCAAACACTTTTTAGACGGCACCCCGCTTCCAGATACTACAAGATATACTTAA 1527 0.4434 MGKACSWSLISIFIIILSCCVSEIHGNKQGRALDKFFKAKFKAGSQINRGHFEAPEIVHEAATATAADVGSQAGLKEKDRIVSLPGQPKVNFSQYGGYVTVNHLAGRAYYYYFVEAQTSKETKPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGRTLYLNRYRWNHAANVLFLESPTGVGFSYSNRSSDYADYYNDDKKTAADNYVFLVNWLERFPEYKKRDFFIAGESYAGHYVPELAHTILYHNKKANKTIVNLKGILIGNAVINDETDDAGMYDFLASHAIISDNVAHDINTYCDHKSSDPSDQRSLQCDTAWDAFYRATRFIDIYNIYAPLFCRNESLTKRPKKHSLVADPCSDNYVIAYLNRAEVQEAIHANVTKLKYDWQPCSGVMGRWGDSPSTMLPLLHEFLHNGLRVWIFSGDIDGRVPVTSTKYSLKKMNLSVETAWHPWYLFAEAGGYTEVYKGGLTFATVRGAGHQVPSYQPARAFSLLKHFLDGTPLPDTTRYT* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1727 508 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Amo08g1727 508 ProSitePatterns Serine carboxypeptidases, serine active site. 226 233 IPR018202 GO:0004185
Amo08g1727 508 PANTHER CARBOXYPEPTIDASE 12 502 - -
Amo08g1727 508 SUPERFAMILY alpha/beta-Hydrolases 75 505 IPR029058 -
Amo08g1727 508 ProSitePatterns Serine carboxypeptidases, histidine active site. 468 485 IPR033124 GO:0004185
Amo08g1727 508 Gene3D alpha/beta hydrolase 75 339 IPR029058 -
Amo08g1727 508 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 12 502 IPR001563 GO:0004185|GO:0006508
Amo08g1727 508 Pfam Serine carboxypeptidase 85 498 IPR001563 GO:0004185|GO:0006508
Amo08g1727 508 Gene3D - 403 498 - -
Amo08g1727 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Amo08g1727 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Amo08g1727 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 212 237 IPR001563 GO:0004185|GO:0006508
Amo08g1727 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 468 481 IPR001563 GO:0004185|GO:0006508
Amo08g1727 508 Gene3D - 357 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1727 Amo-Chr8 28527719 28535856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1727 377 501 Calmodulin-binding Proteins AT2G22960 29.851 1.73e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1727 K16297 - gmx:100783864 682.174