Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1706 ATGGTGCAAAGAGAAAGATCCAAGTTTTTATTTCGTGCAATGGCTGACCCACCTCCACCCAAGCGCCATAAAATTGTTAGAGGAGATGATGATTATATGCCCGGAAACATTCTTGAGATTGAGCTTTCTAAGTTTATGACCTTTGATCACGTGAAATGCAAACCTGGGCCTCGATTGAATCTTGTAGTTGGACCCAATGGTTCTGGAAAAAGTTCTCTCGTGTGTGCTATTGCACTTGGCCTTTGTGGAGAGCCTCAGTTGCTTGGGCGAGCAACTAGTGTCGGGGCATATGTGAAGCGGGGAGAGGAGTCTGGATCCATTAAGATTACATTGAGAGGGAATAACAAAGATGAGTGTATTGCCATTACTCGCAAAATAAATACTAACAACAAGTCTGAGTGGTTGTTAAATGGGAATATAGTTCCCAAAAGTAATGTAGCTGAAACTGTTAAAAGGTTTAACATCCAAGTCAGTAACTTGACTCAATTTTTACCACAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCAGTGCAGCTCCTGGAAGAAACTGAAAAGGCTGTTGGTGATCCACAACTTCCCGAGCAACATCGTGCACTAGTTCATAAAAGTTATGCATTGAGGAATATTGATGTGTCTATGGAGGGGCATTTAGGTACCTTGAATCTGTTGAAGAAACAAAATGCTGAGCTAGAGAAGGATGTTGAGCGTGTCCGTCTAAGAGATGAGATTCTTGCCAAGGCTGAAACCATGAGAAAGAAATTGCCTTGGCTTGAATATGACATGAAGAAGGCTCAATATTGGGAAGCTAAGCAACATGAGAATAATGCGGCAAAGGCAATGGAGGAGTCTGCAAAGTTACTAAATGATCTTAAGGATCCTATTAACAAACAGAAGGAGGAACAGACTGCACTAGATGCCAAATGGAAAAAGGTTGACAGCCGTATAAAGGAGAACTACAAGAAGCGGACGGAACTTCTGGATAAAGAGAGCCAACTGGATGTGGAGATGCAAAGGAATTACAAGGATATGGAAGATTTGAGAAGACAGGAGGAAACTAGGCAAAAAAAATTTGAAAAAATTAGGGAGGAACTTGCTGCTTCTGAACTTGAACTTGAGAATCTAGGTCCTTCTGAACCTCGTCAGCAAGAAGAGTTGCAAAGACTAAGAGCTAAAGCCTCTGATATCGATTATGAAGCTAAGCAAGTGATGAAGCCTCGCATATCACTACTAGAGAGGGAAATAAGTCATAAAGTGACATCCTTGAATGACTGTAAAAAAAGTTTGAGCGAAATGAACAATAAAATTACAAAATGTTTGCATGTATTGCAAGAAGCAGGGACAGACAAAATTTTTGAAGCCTTTAAATGGGTCCAAGAACATCGTAAAATCTTCAATAAGGGGGTTTATGGCCCAGTATTATTAGAGGTGAATGTCTCARATCAAGATCATGCTGCTTATCTAGAGGGTCAAGCTGCGCAATATATTTGGAAGTCTTTCATAACACAAGATCCTCGTGATCGGGACCTCTTGGTGCAGCACCTAAAGTTCTTTGATGTTCCAGTTTTAAATTATACYGGTGAAGTTGACCAACAAAGAGAGACTTTCAGAATTACTGAAGATATGCATGCCCTTGGCATTCACTCCCGGCTGGACCAAGTTTTTGATGCTCCTAGTGCTGTCAAGGAGGTTTTGATTCGCCAGTTTAATTTGGATCATTCTTATATTGGATCCAGAGATACTGATAAGAGGGCTGACGAGGTTCCAAAATTGGGAATTATAAATTTGTGGACACCGGAAAATCACTACCGGTGGTCTAAGTCTAGATATGGGGGTCATATCTCAGCCATGGTCGAACAAGTGGGAGATCCGAAGTTTATAGTGAATAGTTCAAATGCGGGAGAAATTGAGAAGCTGGAATCCCRGGAAAAGGATCTTGAAGGAAKTATTGCTACCTTGGARGAAGATGCTAAAAGATCTCGAGATAAGCSAAAGGCCTTAATTAATGAATATGCTGATCTTCGTAGAAAGATGGAGGAGATTAATAAATTATTCCAACTAGAGAAACAAAAACGTGAAGGTATTCACAACCGTATTGGGAAAAAGAGAGCTGCACTGAAATCATTGGAGGAACCCATTGATAGAGATACCGAGATGGCAAAGCTTGTTGATCAGGCAAATAAACTTCACATTCTGAGATTCCGTAATGCAATGGAATTAAAGGAACTTCTCGTTGAGTGTGTTGCTTACAGAAGAAGCTTTATTGAACAACGGATGTCTTCGATTCAATTTGATGCTAAGATTCGCAAATTGGAGGCAGATTTAAAGCAGCATGAGAGGTCTGCCGTTGAAGCAACTATACAATTTCAGAACCTTAAGAAAGAGACTGAGGCTTGTGAACAGCAGCTGACGGATTCTTTGAATCTTGCTGAATCAATTGCGCCATTGACACCTGAGCTACAGAACAAATTTCGTGAGATGCCCACTACAATTGAGGATTTAAATAATGCTATTCAAGAAACAATCTCTGAGGCCCGGGCAATATTTACACTTAATAATAATGCATTGGAGGAGTATGAGTATCGGCGACAAAAGGTACTTGGTCTGTTCTTGCACTTAGCTTTGCAGTATGTTGACGTGCCAAGTGAAGTCACAGCTTATTTTCAGATAGAAGAGCTTGCAGAAAAAATCGCTGCAGAGAAGGAAGAATATGGAAGGTCTTCTACTGAAATAAAGGAAATCGAGGATAAATGGCTTCCAGCACTTCGAAACCTTGTGGCACTGATCAATGAAACTTTTAGCCGTAATTTTCAAGAGATGGCTGTTGCTGGTGAAGTTTCACTAGATGAGCATGATAAGGAGTATGCCCAATATGGAATTTGTATTAAAGTCAAATTCAGACAAAATGGAAAACTTGAAGTTCTTAGTGCTCATCATCAATCTGGAGGGGAGCGGTCAGTTTCAACTATCGTATATCTTCTTTCCCTTCAAGATCTTACTAATGTCCCATTTAGAGTTGTTGATGAAATCAACCAGGGCATGGACCCAATAAACGAAAGAAAGATGTTCCAGCAACTGGTCAGAGCTGCAAGCAAGCCCAATACACCACAGTGTTTCTTGCTTACCCCCAAATTGCTACCAGACCTGCAATATAGTGAAGCATGCACTATATTGAACGTGTTTAATGGCCCTTGGATTCCCCAACCCTCAAAGCTATGGGAGGAAGGTGAACGATGGAGTATTGTCACCGGTCTCTTGGGGGAAACCCATTGTTGA 3276 0.4084 MVQRERSKFLFRAMADPPPPKRHKIVRGDDDYMPGNILEIELSKFMTFDHVKCKPGPRLNLVVGPNGSGKSSLVCAIALGLCGEPQLLGRATSVGAYVKRGEESGSIKITLRGNNKDECIAITRKINTNNKSEWLLNGNIVPKSNVAETVKRFNIQVSNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALVHKSYALRNIDVSMEGHLGTLNLLKKQNAELEKDVERVRLRDEILAKAETMRKKLPWLEYDMKKAQYWEAKQHENNAAKAMEESAKLLNDLKDPINKQKEEQTALDAKWKKVDSRIKENYKKRTELLDKESQLDVEMQRNYKDMEDLRRQEETRQKKFEKIREELAASELELENLGPSEPRQQEELQRLRAKASDIDYEAKQVMKPRISLLEREISHKVTSLNDCKKSLSEMNNKITKCLHVLQEAGTDKIFEAFKWVQEHRKIFNKGVYGPVLLEVNVSXQDHAAYLEGQAAQYIWKSFITQDPRDRDLLVQHLKFFDVPVLNYTGEVDQQRETFRITEDMHALGIHSRLDQVFDAPSAVKEVLIRQFNLDHSYIGSRDTDKRADEVPKLGIINLWTPENHYRWSKSRYGGHISAMVEQVGDPKFIVNSSNAGEIEKLESXEKDLEGXIATLEEDAKRSRDKXKALINEYADLRRKMEEINKLFQLEKQKREGIHNRIGKKRAALKSLEEPIDRDTEMAKLVDQANKLHILRFRNAMELKELLVECVAYRRSFIEQRMSSIQFDAKIRKLEADLKQHERSAVEATIQFQNLKKETEACEQQLTDSLNLAESIAPLTPELQNKFREMPTTIEDLNNAIQETISEARAIFTLNNNALEEYEYRRQKVLGLFLHLALQYVDVPSEVTAYFQIEELAEKIAAEKEEYGRSSTEIKEIEDKWLPALRNLVALINETFSRNFQEMAVAGEVSLDEHDKEYAQYGICIKVKFRQNGKLEVLSAHHQSGGERSVSTIVYLLSLQDLTNVPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACTILNVFNGPWIPQPSKLWEEGERWSIVTGLLGETHC* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1706 1091 Coils Coil 270 290 - -
Amo08g1706 1091 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 31 1087 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Amo08g1706 1091 CDD ABC_SMC5_euk 35 192 - -
Amo08g1706 1091 Coils Coil 643 648 - -
Amo08g1706 1091 Coils Coil 665 691 - -
Amo08g1706 1091 Coils Coil 890 917 - -
Amo08g1706 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 1034 IPR027417 -
Amo08g1706 1091 Coils Coil 636 641 - -
Amo08g1706 1091 Coils Coil 214 241 - -
Amo08g1706 1091 Gene3D - 36 213 IPR027417 -
Amo08g1706 1091 Coils Coil 761 802 - -
Amo08g1706 1091 Gene3D - 889 1058 IPR027417 -
Amo08g1706 1091 CDD ABC_SMC5_euk 964 1066 - -
Amo08g1706 1091 Coils Coil 650 663 - -
Amo08g1706 1091 Pfam RecF/RecN/SMC N terminal domain 37 1032 IPR003395 -
Amo08g1706 1091 Coils Coil 344 364 - -
Amo08g1706 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1042 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1706 Amo-Chr8 28255192 28279846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1706 21 1080 Structural Maintenance of Chromosomes family AT5G15920 54.245 0.0 1124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1706 K22803 - gmx:100778678 1437.55