Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1696 ATGGCTGACCCACCTCCACCCAAGCGCCATAAAATTGTCAGAGGAGATGATGATTATATGCCCGGAAACATTCTTGAGATTGAGCTTTCTAAGTTTATGACCTTTGATCACGTGAAATGCAAACCTGGGCCTCGATTGAATCTTGTAGTTGGACCCAATGGTTCTGGAAAAAGTTCTCTCGTGTGTGCTATTGCACTTGGCCTTTGTGGAGAGCCTCCGTTGCTTGGGCGAGCAACTAGTGTCGGGGCATATGTGAAGCGGGGAGAGGAGTCTGGATCCATTAAGATTACATTGAGAGGGAATAACAAAGATGAGTGTATTGCCATTACTCGCAAAATAAATACTAACAACAAGTCTGAGTGGTTGTTAAATGGGAATATAGTTCCCAAAAGTAATGTAGCTGAAACTGTTAAAAGGTTTAACATCCAAGTCAGTAACTTGACTCAATTTTTACCGCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCAGTGCAGCTCCTGGAAGAAACTGAAAAGGCTGTAGGTGATCCACAACTTCCCGAGCAACATCGTGCACTAGTTCATAAAAGTTATGCATTGAAGAATATTGAAGTGTCTAAGGAGGGGCATTTAGGTACCTTGAATCTGTTGAAGAAACAAAATGCTGAACTAGAGAAGGATGTTGAGCGTGTCCGTCTAAGAGATGAGATTCTTGCCAAGGCTGAAACCATGAAAAAGAAATTGCATTGGCTTGAATATGACATGAAGAAGGCTCAATATTGGGAAGCTAAGCAACATGAGAATAATGCGGCAAAGGCAATGGAGGAGTCTGCAAAGTTACTAAATGATCTTAAGGATCCTATTAACAAACAGAAGGAGGAACAGACTGCACTAGATGCCAAATGGAAAAAGGTTGACAGCCGTATAAAAGAGAACTACAAGAAGCGGTCAGAACTTCTAGATAAAGAGAGCCAACTGGATGTGGAGATGCAAAGGAATTACAAGGATATGGAAGATTTGAGAAGACAGGAGGAAACTTGGCAAAAAAAACTTGAAAAAATTAGGGAGGAACTTGCTGCTTCTGAACTTGAACTTGAGAATCTAGGTCCTTCCGAACCTCGTCAACAAGAAGAGCTGCAAAGACTAAGAGCTAAAGCCTCTGATATCGATTATGAAGCTAAGCAAGTGATGAATCCTCGCATATCACAACTAGAGAGGGAAATAAGTCATAAAGTGACATCCTTGAATGAATGTAAAAAAAGTTTGAGCGAAATGAACAATAAAATTACAAAATGTTTGCATGTATTGCAAAAAGCAGGGGCAGACAAAATTTTTGAAGCCTTTAAATGGGTCCAAGAACATCGTAAAATCTTCAATAAGGGGGTTTATGGCCCAGTATTATTAGAGGTGAATGTCTCAAATCAAGATCATGCTGCTTATCTAGAGGGTCAAGCTGCGCAATATATTTGGAAGTCTTTCATAACACAAGATCCTCGTGATCGGGACCTCTTGGTGCAGCACCTAAAGTTCTTTGATGTTCCAGTTTTAAATTATACCGGTGAAGTTGACCAACAAAGAGAGACTTTCAGAATTACTGAAGATATGCATGCCCTTGGCATTCACTCCCGGCTGGACCAAGTTTTTGATGCTCCTAGTGCTGTCAAGGAGTATATTGGATCCAGAGATACTGATAAGAGGGCTGACGAGGTTCCAAAATTGGGAATTATAAATTTGTGGACACCGGAAAATCACTACCGGTGGTCTAAGTCTAGATATGGGGGTCATATCTCAGCCATGGTCGAACAAGTGGGAGATCCGAAGTTTATAGTGAATAGTTCAAATGCGGGAGAAATTGAGAAGCTGGAATCCCGGGAAAAGGATCTTGAAGGAATTATTGCTACCTTGGAGGAAGATGCTAAAAGATCTCGAGATAAGCAAAAGGCCTTAATTAATGAATATGCTGATCTTCGTAGAAAGATGGAGGAGATTAATAAATTATTTCAACTAGAGAAACAAAAACGTGAAGGTATTCACAACCGTATTGGGAAAAAGAGAGCTGCACTGAAATCATTGGAGGAACCCATTGATAGAGATACTGAGATGGCAAAGCTTGTTGATCAGGCAAATAAACTTCACATTCTGAGATTCCGTAATGCAATGAAATTAAAGCAACTTCTCGTTGAGTGTGTTGCTTACAGAAGAAGCTTTATTGAACAACGGATGTCTTCGATTCAATTTGATGCTAAGATTCGAAAATTGGAGGCAGATTTAAAGCAGCATGAGAGGTCTGCCATTGAAGCAACTATACAATTTCAGAACCTTAAGAAAGAGACTGAGGCTTGTGAACGGCAGCTGACGGATTCTTTGAATCAAGCTGAATCAATTGCACCATTGACACCTGAGCTACAGAACGAATTTCGTGAGATGCCCACTACAATTGAGGATTTAAGTAATGCTATTCAAGAAACAATCTCTGAGGCCCGGGCAATATTTACACTTAATAATAATGCATTGGAGGAGTATGAGTATCGGCGACAAAAGGTACTTGTTCTGTTCTTGCACTTAGCTTTGCAGTATGTTGATGTGCCAAGTGAAGTCACAGATTATTTTCAGATAGAAGAACTTGCAGAGAAAATTGCTGCAGAGGAGGAAGAATATGGAAGGTCTTCTACTGAAATAAAGGAAATTGAGGATAAATGGCTTCCAGCACTTCGAAACCTTGTGGCACTGATCAATGAAACTTTTAGCCGTAATTTTCAAGAGATGGCTGTTGCTGGTGAAGTTTCACTAGATGAGCATGATAAGGAGTATGCCCAATATGGAATTTGTATTAAAGTCAAATTCAGACAAAATGGAAAACTTGAAGTTCTTAGTGCTCATCATCAATCTGGAGGGGAGCGGTCAGTTTCAACTATCGTATATCTTCTTTCCCTTCAAGATCTTACTAATGTCCCATTTAGAGTTGTTGATGAAATCAACCAGGGCATGGACCCAATAAACGAAAGAAAGATGTTCCAGCAACTGGTCAGAGCTGCAAGCAAGCCCAATACACCACAGTGTTTCTTGCTTACCCCCAAATTGCTACCAGACCTGCAATATAGTGAAGCATGCACTATATTGAACTATGGGAGGAAGGTGAAAGATGGAGTATTGTCACCGGTCTCTTGGGGGAAACCCATTGTTGAAGTAAAACTCAATGTAACTAAATACACTGCATTTGAATGGTCCATTTTTTTGAATTTTGCCAATAATCTCGTTTTCTCTTTGGTCTGCTCCCTCCTCTTCCCCAATATCTGCCTGCATTCTCTCCAGCTCTTCCTTTATTTCCCTGATAAACTAACCAGCACTACTGAATTATTGATTTTCTTCGCAAGAAGCCCTCCTGATATGCTGTGTTTGGACGAGGTATGGGCAGATATTCCAAAGTTCTCTGTACACCATCAATCATTCTTCGGAAGAAACATGATTGGAATTTATGTTCATAGGAAGTTTAGAATGGTTTATCTTCCATGGATAGATACATACACACCTAGTAGAACGAAAAAAATTTATTACATTTTCCCCTTTCTAATTGAAATATAG 3564 0.401 MADPPPPKRHKIVRGDDDYMPGNILEIELSKFMTFDHVKCKPGPRLNLVVGPNGSGKSSLVCAIALGLCGEPPLLGRATSVGAYVKRGEESGSIKITLRGNNKDECIAITRKINTNNKSEWLLNGNIVPKSNVAETVKRFNIQVSNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALVHKSYALKNIEVSKEGHLGTLNLLKKQNAELEKDVERVRLRDEILAKAETMKKKLHWLEYDMKKAQYWEAKQHENNAAKAMEESAKLLNDLKDPINKQKEEQTALDAKWKKVDSRIKENYKKRSELLDKESQLDVEMQRNYKDMEDLRRQEETWQKKLEKIREELAASELELENLGPSEPRQQEELQRLRAKASDIDYEAKQVMNPRISQLEREISHKVTSLNECKKSLSEMNNKITKCLHVLQKAGADKIFEAFKWVQEHRKIFNKGVYGPVLLEVNVSNQDHAAYLEGQAAQYIWKSFITQDPRDRDLLVQHLKFFDVPVLNYTGEVDQQRETFRITEDMHALGIHSRLDQVFDAPSAVKEYIGSRDTDKRADEVPKLGIINLWTPENHYRWSKSRYGGHISAMVEQVGDPKFIVNSSNAGEIEKLESREKDLEGIIATLEEDAKRSRDKQKALINEYADLRRKMEEINKLFQLEKQKREGIHNRIGKKRAALKSLEEPIDRDTEMAKLVDQANKLHILRFRNAMKLKQLLVECVAYRRSFIEQRMSSIQFDAKIRKLEADLKQHERSAIEATIQFQNLKKETEACERQLTDSLNQAESIAPLTPELQNEFREMPTTIEDLSNAIQETISEARAIFTLNNNALEEYEYRRQKVLVLFLHLALQYVDVPSEVTDYFQIEELAEKIAAEEEEYGRSSTEIKEIEDKWLPALRNLVALINETFSRNFQEMAVAGEVSLDEHDKEYAQYGICIKVKFRQNGKLEVLSAHHQSGGERSVSTIVYLLSLQDLTNVPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACTILNYGRKVKDGVLSPVSWGKPIVEVKLNVTKYTAFEWSIFLNFANNLVFSLVCSLLFPNICLHSLQLFLYFPDKLTSTTELLIFFARSPPDMLCLDEVWADIPKFSVHHQSFFGRNMIGIYVHRKFRMVYLPWIDTYTPSRTKKIYYIFPFLIEI* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1696 1187 Pfam RecF/RecN/SMC N terminal domain 24 1008 IPR003395 -
Amo08g1696 1187 Gene3D - 865 1026 IPR027417 -
Amo08g1696 1187 Coils Coil 201 228 - -
Amo08g1696 1187 Coils Coil 737 785 - -
Amo08g1696 1187 Coils Coil 866 893 - -
Amo08g1696 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 1042 IPR027417 -
Amo08g1696 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1017 IPR027417 -
Amo08g1696 1187 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1035 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Amo08g1696 1187 Coils Coil 257 277 - -
Amo08g1696 1187 Coils Coil 612 667 - -
Amo08g1696 1187 Coils Coil 331 358 - -
Amo08g1696 1187 CDD ABC_SMC5_euk 940 1035 - -
Amo08g1696 1187 CDD ABC_SMC5_euk 22 179 - -
Amo08g1696 1187 Gene3D - 23 203 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1696 Amo-Chr8 28101439 28126452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1696 8 1035 Structural Maintenance of Chromosomes family AT5G15920 54.275 0.0 1077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1696 K22803 - gmx:100778678 1352.42