Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1672 ATGGAGGCCGCAGTGATCGATGCCGGCTCAATGCTCCTCAAGGCCGGTTTCGCAGTTCCCGATCAACCTCCTGCATTGATAATTCCCACACAGATGAAGCGAATGCTTGATGATGGGTCAGGAAATGATAATCCAGCAGTAGATGACTTTGCGGTTGATCCGGTGGTGAGAGGTTTTGTAAGTGATTGGGATGCCATGGAGGATTTGTTGCATTATGTATTGTACACTGGGCTTGGATGGGAAATGGGAAATGAAGGCCAGATACTATTTACAGATCCACTTTGTACCCCAAAGGCTAACAAAGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCATCGGAACAGGCAGTGTTGTCGCTATATGCTGTGGGACGTATCTCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCACCAGTAATTGAAGGTGCTGTTAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTACTGATCTAACCAATTTCCTGGCACAAGAACTTGGCAAATCCAATCCACTAGTCAATATCAGCTTGTCTGATGTTGAGAAAATAAAACAACAATACTCGTGTTGTGCTGAAGATGAATTAGCTTATCAGAAGACCCGGAATTCTTGCCCTGAGGAGAAACATACCCTTCCTGATGGACAGGTGATAACAATTGGAAGAGAAAGATATACTGTTGGTGAAGCTTTATTCCAGCCATGTCTATTGGGTTTGGAGGCTCATGGCATTGTTGACCAGCTTGTTCGAACTATTTCAACTGTGTCATCTGATAATCATCGGCAACTCCTGGAAAATACTGTGGTCTGTGGTGGCACTTCTTCTATGACTGGGTTTGAAGAGAGATTTCAGAAGGAATCTAGCTTGAGTTCATCTGCTATTCGACCTATGCTGGTGAAGCCGCCGGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGGGCCATACTTGCCAAAGTAGTTTTTCCCCAAAATCAGCATGTAACTAAGGCAGACTATGACAAAACTGGACCTTCGGTGGTTCATCGGAAATGCTTCTAA 1086 0.4355 MEAAVIDAGSMLLKAGFAVPDQPPALIIPTQMKRMLDDGSGNDNPAVDDFAVDPVVRGFVSDWDAMEDLLHYVLYTGLGWEMGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPLVNISLSDVEKIKQQYSCCAEDELAYQKTRNSCPEEKHTLPDGQVITIGRERYTVGEALFQPCLLGLEAHGIVDQLVRTISTVSSDNHRQLLENTVVCGGTSSMTGFEERFQKESSLSSSAIRPMLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHVTKADYDKTGPSVVHRKCF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1672 361 PANTHER ACTIN 1 360 IPR004000 -
Amo08g1672 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Amo08g1672 361 Pfam Actin 2 361 IPR004000 -
Amo08g1672 361 Gene3D - 123 324 - -
Amo08g1672 361 PRINTS Actin signature 45 67 IPR004000 -
Amo08g1672 361 PRINTS Actin signature 100 113 IPR004000 -
Amo08g1672 361 PRINTS Actin signature 125 144 IPR004000 -
Amo08g1672 361 PRINTS Actin signature 217 233 IPR004000 -
Amo08g1672 361 Gene3D - 5 355 - -
Amo08g1672 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Amo08g1672 361 PANTHER BNACNNG31150D PROTEIN 1 360 - -
Amo08g1672 361 SMART actin_3 1 361 IPR004000 -
Amo08g1672 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Amo08g1672 361 CDD NBD_sugar-kinase_HSP70_actin 4 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1672 Amo-Chr8 27741032 27757425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1672 5 361 Cytoskeleton Gene Families AT3G12110 37.867 4.63e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1672 K16615 - gmx:100794153 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2904 18 123939289 123947042 Amo08g1672 08 27741032 27757425 hybridization