Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1658 ATGGTGAAGGAGAAAAGCAAGAATAATGGGAGTAAGCAAAGGAAAGGGCTGTGGTCACCGGAGGAAGATGAGAAGCTGATAAGGTACATGATAACAAAGGGAGAAGGGTGTTGGAGTGACATTGCAAGAAATGCCGGCCTAGAGCGCTGCGGCAAGAGCTGCCGCCTTCGTTGGATAAACTACCTCCGACCCGACCTTAAACGCGGCGCCTTTTCTCTCCAAGAGGAAGACCTCATCATCCACTTGCACTCCATTCTTGGCAACAGGTGCATTTTTCTTTCTATTCATTCAACCAACATCATCTGCCTCTCATACTTCTTTTCTTGA 327 0.4771 MVKEKSKNNGSKQRKGLWSPEEDEKLIRYMITKGEGCWSDIARNAGLERCGKSCRLRWINYLRPDLKRGAFSLQEEDLIIHLHSILGNRCIFLSIHSTNIICLSYFFS* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1658 108 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Amo08g1658 108 CDD SANT 18 62 IPR001005 -
Amo08g1658 108 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Amo08g1658 108 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Amo08g1658 108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Amo08g1658 108 SMART sant 14 64 IPR001005 -
Amo08g1658 108 Gene3D - 15 67 - -
Amo08g1658 108 PANTHER TRANSCRIPTION FACTOR MYB83 8 89 - -
Amo08g1658 108 PANTHER MYB DOMAIN PROTEIN 55 8 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1658 Amo-Chr8 27413925 27414251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1658 7 89 MYB Transcription Factor Family AT3G08500 85.542 7.36e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo08g1658 Myb_DNA-binding 7.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1658 K09422 - gmx:100813660 164.081