Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1636 ATGTCTTCTCATCACCATCAATGCCAGAACAACATTATGTTGCATTCCCGTTTCTTCAAGGCTATACTCAAAACTAATCTTCAAAGGATTAAAATACCCAATAAGTTTTCAAGGAGACATGGAAGCGCTCTTTCAAATCCAGTGTTTCTTAAGCCTCCAGATGGCACTCTATGGAAAGTGTATTGGACAAAAAAGAATAGTGATGAAGTTTGGTTTGTAAAAGGATGGAAGGAATTTACCAAAAACTACTCTCTTAATGAAGGATATTTAGTTGTGTTTAAATATGAAGAAACTTCTCAGTTCGATGTAATCATACTTGAGACAAATGATCTAGAAATAGATTATTCCAAATATGAGACTGTGAATAGAAAGGGCAAATGTGACCAGAGAGATGAGAAAACAGTTGGAATCTTAAAGGAAATCCCTGTAAAAAATAATGACGCTGGAAAAAGATTGACATTGTTTTCTCCTCAGCCTCATATGAAAGTCAGAGGTGAGAGCTCTACTCGAAGAAGAACATCATCTTTGAATTGGCCAAAGGAACTTAAAGCTCAGGAAATAGCTCAGAAATTCATCTCCTATAACCCTTTCTTCACACTGTTCATAAAGCCAAATTACCTCACAGAATACCAAGTGAATGTACCGACTTTGAAAGGTTACATTGAGGACAAGGTGAAGGACGTGGCGCTTAAGGTTGGGGAAAGACAATGGCAAGTAAAGTTGCTCCCTTGTCGCAACTCAGCTCGCCGCCTCTCAGGTGGTTGGTCCTTGTTTGTCCATGAGAATGGATTGCAAGCTGAAGATGTTTGTGTCTTTGAACTGATTAACATGGAAGATTCAGTTTTTAAGGTTCATGTTTTCAAAAGGTAG 870 0.3805 MSSHHHQCQNNIMLHSRFFKAILKTNLQRIKIPNKFSRRHGSALSNPVFLKPPDGTLWKVYWTKKNSDEVWFVKGWKEFTKNYSLNEGYLVVFKYEETSQFDVIILETNDLEIDYSKYETVNRKGKCDQRDEKTVGILKEIPVKNNDAGKRLTLFSPQPHMKVRGESSTRRRTSSLNWPKELKAQEIAQKFISYNPFFTLFIKPNYLTEYQVNVPTLKGYIEDKVKDVALKVGERQWQVKLLPCRNSARRLSGGWSLFVHENGLQAEDVCVFELINMEDSVFKVHVFKR* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1636 289 CDD B3_DNA 197 288 IPR003340 GO:0003677
Amo08g1636 289 Pfam B3 DNA binding domain 25 102 IPR003340 GO:0003677
Amo08g1636 289 Pfam B3 DNA binding domain 210 289 IPR003340 GO:0003677
Amo08g1636 289 CDD B3_DNA 17 106 IPR003340 GO:0003677
Amo08g1636 289 Gene3D - 12 110 IPR015300 -
Amo08g1636 289 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Amo08g1636 289 PANTHER B3 DOMAIN-CONTAINING 16 288 - -
Amo08g1636 289 Gene3D - 176 289 IPR015300 -
Amo08g1636 289 SMART B3_2 197 288 IPR003340 GO:0003677
Amo08g1636 289 SMART B3_2 18 109 IPR003340 GO:0003677
Amo08g1636 289 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 16 288 - -
Amo08g1636 289 SUPERFAMILY DNA-binding pseudobarrel domain 195 288 IPR015300 -
Amo08g1636 289 SUPERFAMILY DNA-binding pseudobarrel domain 17 116 IPR015300 -
Amo08g1636 289 ProSiteProfiles B3 DNA-binding domain profile. 235 289 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1636 Amo-Chr8 27024264 27026501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1636 18 288 B3 DNA Binding Superfamily AT3G18990 28.190 5.37e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo08g1636 B3 7.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1636 - - lang:109346569 276.174