Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1635 ATGCCCCTCCACCCTCATTACTTCCCTTCTTCCTCCTCCTCCTCTTCTTCTTCTTTCATTTCTAATCAAAATTCCATTAATAGTTCCCTCTTCTCATCACCATCGTATCCTCTCTATTTCTCAAACACCAGATTATTCTCCGTCCAATTGGAACCACCCTCTTCATCATCTTCTTCTTCCGTGGCAGCACTGCCTCCTCCTCCTTCTTCCCCTCCTCTCATAGAAGCCCTTCCTTTCATAAACACTATAAGCCTCAAAAACCATAGCAACAACAATAGCAGTGATCAAGAAGTAGTGGTGGACAAGAAGAGAAAAGACAACAACAAAAAAGATCAAGAGAATCTTTTGGCTGATGATGATTATGATGATAACGAAGGTGTTGCCGTAGCGCTACGAATAGGGCTTCCTAATAGCGTGTCTGATAATACTTCCGGTATTGATGATCGGCAAAAGAAGAAGAAGATCTCATCAAACTCAGAAGAAATTGTGGGAGAAAAAGATGAAGTGATGAGCGTGGTTTCTGAGCATCACCCTTCGTTGTTAGAGAGATTTAACAATAACAAGACACAGTTTCAGTATTGGATTCCCACAGCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCATGCCCAGTCTGCTCCAAGACTTTCAACCGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTCTGTTGTGCGCCAGGTTGCAAGCACAATATAGACCACCCAAGAGCGAGGCCTCTCAAGGACTTCAGAACCCTCCAAACGCATTACAAGCGAAAGCACGGCGTGAAACCCTACGCTTGCCGGAAATGTGGCAAGCCCTTCGCCGTGAAAGGCGATTGGCGGACGCATGAGAAGAACTGCGGCAGGATCTGGTATTGTTTGTGTGGGTCTGATTTCAAGCATAAGAGGTCCCTGAAGGATCATGTCAAAGCCTTTGGCCATGGACATGGTGCTTTTGGTATTGATTGCATGCAAGAGGAGGATGAAGCAGCTTCCGAAGTTGAACATGATGGTGATTGCTCCTTGTAG 1110 0.4495 MPLHPHYFPSSSSSSSSSFISNQNSINSSLFSSPSYPLYFSNTRLFSVQLEPPSSSSSSSVAALPPPPSSPPLIEALPFINTISLKNHSNNNSSDQEVVVDKKRKDNNKKDQENLLADDDYDDNEGVAVALRIGLPNSVSDNTSGIDDRQKKKKISSNSEEIVGEKDEVMSVVSEHHPSLLERFNNNKTQFQYWIPTASQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYACRKCGKPFAVKGDWRTHEKNCGRIWYCLCGSDFKHKRSLKDHVKAFGHGHGAFGIDCMQEEDEAASEVEHDGDCSL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1635 369 MobiDBLite consensus disorder prediction 97 116 - -
Amo08g1635 369 SUPERFAMILY beta-beta-alpha zinc fingers 277 312 IPR036236 -
Amo08g1635 369 Pfam Zinc finger, C2H2 type 208 227 IPR013087 -
Amo08g1635 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Amo08g1635 369 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Amo08g1635 369 SMART c2h2final6 208 230 IPR013087 -
Amo08g1635 369 SMART c2h2final6 292 312 IPR013087 -
Amo08g1635 369 SMART c2h2final6 318 341 IPR013087 -
Amo08g1635 369 MobiDBLite consensus disorder prediction 139 160 - -
Amo08g1635 369 PANTHER ZINC FINGER PROTEIN WIP2 17 363 IPR043584 GO:0003700|GO:0010468
Amo08g1635 369 MobiDBLite consensus disorder prediction 145 160 - -
Amo08g1635 369 Gene3D Classic Zinc Finger 207 230 - -
Amo08g1635 369 SUPERFAMILY beta-beta-alpha zinc fingers 201 230 IPR036236 -
Amo08g1635 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 312 IPR013087 -
Amo08g1635 369 Gene3D Classic Zinc Finger 271 345 - -
Amo08g1635 369 MobiDBLite consensus disorder prediction 85 116 - -
Amo08g1635 369 PANTHER ZINC FINGER PROTEIN WIP2 17 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1635 Amo-Chr8 27015451 27020167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1635 127 362 C2H2 Transcription Factor Family AT3G57670 64.173 6.52e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo08g1635 zf-C2H2 0.00065 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1635 - - ahf:112707475 649.432