Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1629 ATGGAGGCCAGGATGAGGAGAACAACAGTTGAGAAGATGAGGAAGGATAGCACAGTTGATGAGGTAGAAGAGGAGTTAGAAGAGGAAGATGAGAGTGGTGTTGGTGATGGTGTCCTTGCAGAAGAAGAGAAGAAGAAAAGTGCTGTTGGAAGTGGGAGAAGAGGATCAAATGGGGCAGGAGGATACCACCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTGGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAATTTGATGAAGCCAAAAGAAGCTGCCGCAGGCGCTTGGCCGGACACAATGAGAGACGCCGGAAGAGCAACATAGAGCCTTGCAACGAGGGAAGCGGCCGAGGCGGCAAAGGGCAACCCCCTAAGGAAAGCCACTGCAGAAACGCCGACGATCGGGGAAGAACTCAGATGAACATTTCAGGGAGCTCTGGCTACAAGTCCTTCCATATC 504 0.5258 MEARMRRTTVEKMRKDSTVDEVEEELEEEDESGVGDGVLAEEEKKKSAVGSGRRGSNGAGGYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNIEPCNEGSGRGGKGQPPKESHCRNADDRGRTQMNISGSSGYKSFHI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1629 168 SUPERFAMILY SBT domain 58 124 IPR036893 GO:0003677|GO:0005634
Amo08g1629 168 MobiDBLite consensus disorder prediction 1 20 - -
Amo08g1629 168 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 168 IPR044817 GO:0003677
Amo08g1629 168 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 59 168 - -
Amo08g1629 168 MobiDBLite consensus disorder prediction 21 36 - -
Amo08g1629 168 Coils Coil 12 32 - -
Amo08g1629 168 MobiDBLite consensus disorder prediction 112 168 - -
Amo08g1629 168 Gene3D - 48 108 IPR036893 GO:0003677|GO:0005634
Amo08g1629 168 ProSiteProfiles Zinc finger SBP-type profile. 43 121 IPR004333 GO:0003677
Amo08g1629 168 MobiDBLite consensus disorder prediction 151 168 - -
Amo08g1629 168 MobiDBLite consensus disorder prediction 1 64 - -
Amo08g1629 168 Pfam SBP domain 57 120 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1629 Amo-Chr8 26835117 26835953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1629 59 158 SBP-box Gene Family AT3G15270 61.000 5.14e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo08g1629 SBP 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1629 - - gmx:100815775 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1630 18 32441406 32442710 Amo08g1629 08 26835117 26835953 hybridization