Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1619 ATGCCTCACAAGTTCTACCATGGCCGCACAGGTCGTGTCTGGAACATCACGAAATGCGCCATTGGTGTTGAGGTCAACAAGCAGGTGGGGAACAGAATAATCAGGAAGAGAATTCATGTACGTGTGGAGCATGTTATGCCTTCCAGGTGCACGGAAGAGTTCCGCCTCAGGAAGATCAACAATGACAAACTTAAGACTGAGGCAAAGGCTAATGGACAACAAATCAGTACCAAGAGGCAGCCTGAGGGACCTAAACCTGGATTCATGGTTGAAGCTGCTACTTTAGAGACTGTCACTCCCATTCCATATGATGTTGTCAATGATCTTAAAGGAGGCTATTAG 342 0.4678 MPHKFYHGRTGRVWNITKCAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKINNDKLKTEAKANGQQISTKRQPEGPKPGFMVEAATLETVTPIPYDVVNDLKGGY* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1619 113 Gene3D Ribosomal protein L21 1 46 IPR036948 GO:0003735|GO:0005840|GO:0006412
Amo08g1619 113 PANTHER 60S RIBOSOMAL PROTEIN L21 1 113 IPR001147 GO:0003735|GO:0005840|GO:0006412
Amo08g1619 113 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 113 - -
Amo08g1619 113 Pfam Ribosomal protein L21e 1 50 IPR001147 GO:0003735|GO:0005840|GO:0006412
Amo08g1619 113 Gene3D - 48 105 - -
Amo08g1619 113 MobiDBLite consensus disorder prediction 66 80 - -
Amo08g1619 113 SUPERFAMILY Translation proteins SH3-like domain 1 48 IPR008991 -
Amo08g1619 113 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1619 Amo-Chr8 26683566 26684527 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1619 1 113 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 83.186 7.68e-69 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1619 K02889 - gmx:100305629 218.009