Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1605 ATGGGGGGCATGTGTTGCAAGCCCTCTGCCATTGAGGACAGTAAGGAGAGTCCGAGGGAGCGTTTATCGGGCAAGACTGTGTCGGATTTGCGTGTAGCTAGGGGAGCTTCATCGAGGAGGGAGGAATCATATCGAGTGAAGGATAGGTACGATAGCAATGATCCGAGGGTTGGATTGATTGATAAGCAAGGGAATGGCGCCGTTCGTGTGCAAGCTGATAATTTTGAGAGGAAGAGGGAGAAAATGGAATATGTTGTAGCTCCACATCCGGCAATTGGGACTGTTCCCAAGGCCATGGAAGGAGAGCATGTTGCAGCTGGATGGCCCTCATGGCTGGCTGCAGTGGCTGGAGAGGCTATCAAAGGATGGTTGCCTCGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGCCAAGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGATTGTTGCTCTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTTACATCTAGGATGTCATGCAGCTTATACCTTGTTTTTGAGTACATGGAACATGACTTGGCTGGGCTCGCATCACATCCAGGACTGAAGTTTACAGAAGCACAGGTTAAATGTTACATGCAGCAACTTCTACGTGGACTTGATCACTGCCACAACTGTGGAGTGCTCCACCGCGACATTAAGGGTTCCAATCTTTTGATTGACAATAATGGAATCTTGAAGATTGCAGACTTTGGTTTAGCAAGCTTTTTTGATCCCAATCAAATTCAACCATTGACAAGCCGAGTTGTCACGCTTTGGTATAGACCGCCTGAGCTTTTACTTGGAGCCACTTACTATGGCACCGCTGTAGACTTATGGAGCACGGGTTGCATACTTGCCGAGCTGTATGCCGGCAAGCCAATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTGTGCGGTTCACCATCTGAGGATTATTGGAGAAAGTCAAAGTTACCTCATGCGACAATATTTAAGCCTCAACAGCCCTATAGGCGTTGTGTTTCTGAAACATTCAAGGACTTTCCTGCACCTGCAATACAACTGATAGAGACCCTTTTATCCATAGATCCTGCTGATCGTGGAACTGCAGCATCTGCTTTAAGGAGTGAGTTCTTCTCAACGAAACCTCTTCCTTGTGATCCTTCAATCTTACCAAAGTATCCGCCTAGCAAAGAGTTTGATGCTAAAGTAAGGGATGAAGAAGCTAGAAGGCAAGGAGCAGCAGGAAACAAGGGCCAGAAACATGACCATGAGAGAAGAGGTGCAAGAGAATCACGAGCCGTACCTGCACCAGATGCCAATGCTGAACTTGTCTCTTCAATGCAGAAGAGACAAAGTTATGCCAATTCTCAAAGCAGAAGTGAGAAGTTTAACCCTCACCCAGAAGAAGTTGCTTCTGGATTTCCCATTGATCCTCCTAGGCCATCACAAACTGCAGAAGTAAGTGCGGATCCCCAGGTTCATCAGCATAAAAGAGCCTCCCATTCAGGTCCGCTGACTCACCGTGCTGCGTGGGCTAAAGCCGGGAAGAACCAGGATGATGCTCCGAAGATTTCAATGGGGGGTGGTGGCGACTTATCAACAATATCTGGCTTAGTTGCGGCTAGAAGAAGTATGTTGTCCGATGATCGGAGAGAAAGGTCTGGATCGTCGCAAGTGGAAGCTCCAAAAATAATAACCAGGTTCCCAGGATCCTTCAAAGAGCCCTCTGAATCATTGATGCAGCAGGATCAGAAGCATCATGCACATGCTCCTCAAAAGGAAGAAGGGAGAGTCAACAACAAAGACCCAGTTCTTGTTGGTTATGGCTCCAAGGGTCCTAAAATTCATTATTCTGGTCCATTGCTAGTTCCATCAAGCAACATGGACCAGATGTTGAAAGACCACGACCGCCAAATTCAAGAGGCGGTTAGACGAGCTCGCTTAGACAAGGCGAAGATGAGGAGACTCCAAGCTGAAGGCAACCAGATAACCAATTCATTATTCGTTTCTGGGCGTTGA 2130 0.4638 MGGMCCKPSAIEDSKESPRERLSGKTVSDLRVARGASSRREESYRVKDRYDSNDPRVGLIDKQGNGAVRVQADNFERKREKMEYVVAPHPAIGTVPKAMEGEHVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHNCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNQIQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPAPAIQLIETLLSIDPADRGTAASALRSEFFSTKPLPCDPSILPKYPPSKEFDAKVRDEEARRQGAAGNKGQKHDHERRGARESRAVPAPDANAELVSSMQKRQSYANSQSRSEKFNPHPEEVASGFPIDPPRPSQTAEVSADPQVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGGGDLSTISGLVAARRSMLSDDRRERSGSSQVEAPKIITRFPGSFKEPSESLMQQDQKHHAHAPQKEEGRVNNKDPVLVGYGSKGPKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQITNSLFVSGR* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1605 709 MobiDBLite consensus disorder prediction 582 637 - -
Amo08g1605 709 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1605 709 MobiDBLite consensus disorder prediction 616 637 - -
Amo08g1605 709 MobiDBLite consensus disorder prediction 12 27 - -
Amo08g1605 709 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Amo08g1605 709 MobiDBLite consensus disorder prediction 434 469 - -
Amo08g1605 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Amo08g1605 709 MobiDBLite consensus disorder prediction 425 528 - -
Amo08g1605 709 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Amo08g1605 709 PANTHER CELL DIVISION PROTEIN KINASE 1 691 - -
Amo08g1605 709 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Amo08g1605 709 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1605 709 CDD STKc_CDK9_like 131 415 - -
Amo08g1605 709 Coils Coil 676 696 - -
Amo08g1605 709 MobiDBLite consensus disorder prediction 1 46 - -
Amo08g1605 709 MobiDBLite consensus disorder prediction 481 498 - -
Amo08g1605 709 PANTHER CYCLIN-DEPENDENT KINASE 1 691 - -
Amo08g1605 709 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Amo08g1605 709 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1605 Amo-Chr8 26388258 26394614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1605 123 460 Core Cell Cycle Gene Families AT5G10270 53.107 3.88e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo08g1605 Pkinase 7.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1605 - - gmx:100792173 1306.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1603 18 31471063 31477470 Amo08g1605 08 26388258 26394614 hybridization