Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1604 ATGGACAGCTTCTACCACCACCATAACCACCACTTTGACAACAGCGACACTCACTTGCCACCTGGATTCCGATTCCACCCCACCGATGAAGAACTCATCACCTACTACCTCGTCAAGAAGGTTCTCGACAACACCTTCACCGGAAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCGAAGATGGGTGAGAAAGAATGGTACTTCTTCAGCTTAAGGGACAGGAAGTACCCAACTGGGTTGCGCACAAATAGAGCGACGGAAGCTGGGTACTGGAAAGCCACTGGAAAAGACAGAGAGATCTACAGCTCCAAGACTTGTGCTCTTGTTGGAATGAAGAAGACACTTGTTTTCTACAGAGGAAGAGCTCCCAAGGGTGAGAAGAGCAACTGGGTGATGCATGAGTATCGGCTTGAAGGCAAATTTGCATACCATTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATTTCTCGTGTGTTCCAGAAGACAACCACCGGGGGTGGTGGTGGAGGTGGAGGTGGAGGCTCAGCCGTGTCAACCACCGCCGGCGGGTCCAAGAAGGCGAAAATGAGCACTTCAACCACCACTTCTACAATGAGCTTCTGCCCTGAACCAAGTTCTCCCTCTTCGGTTTACCTTCCACCACTTCTCGACTCTTCACCTTACACTACCGCCACCACAGGCTCCGTCACCTCCGCCGCCGCAGCATACGACGGCCGCCAGAGCTCCTCCTTCGACAACAACAACAACAACAACGATAGCACAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCAACAACTTTGTCAATGGGTTCTTCGATCTTGCTCCTATGGATTCCTTCGCTCGATTCCAAAGAAACAACAATGTCGGTGTTTCTGCATTCCCAAGTCTAAGGTCGCTGCAAGATAACCTTCAAATTAACCCTTTGTTTTTCTCCGCCGCAGCGGCGCAGCCTCTCCACGGCGGCGAGCTTCACGCCGCGGGGACCTGGCCGGTGCCGGATGATCAGAGGGTTGCCGAGGCTGCTGCCGCCGGCATGGCTTTGGGACATTCCGAGCTTGATTGCATGTGGGGCTATTGA 1113 0.5292 MDSFYHHHNHHFDNSDTHLPPGFRFHPTDEELITYYLVKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKTTTGGGGGGGGGGSAVSTTAGGSKKAKMSTSTTTSTMSFCPEPSSPSSVYLPPLLDSSPYTTATTGSVTSAAAAYDGRQSSSFDNNNNNNDSTREHVSCFSTISNNFVNGFFDLAPMDSFARFQRNNNVGVSAFPSLRSLQDNLQINPLFFSAAAAQPLHGGELHAAGTWPVPDDQRVAEAAAAGMALGHSELDCMWGY* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1604 370 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Amo08g1604 370 SUPERFAMILY NAC domain 10 171 IPR036093 GO:0003677|GO:0006355
Amo08g1604 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 366 - -
Amo08g1604 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 10 366 - -
Amo08g1604 370 MobiDBLite consensus disorder prediction 174 216 - -
Amo08g1604 370 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Amo08g1604 370 MobiDBLite consensus disorder prediction 187 216 - -
Amo08g1604 370 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1604 Amo-Chr8 26295693 26297439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1604 1 370 NAC Transcription Factor Family AT5G53950 52.778 4.08e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo08g1604 NAM 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1604 - - cam:101501114 475.322