Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1574 ATGGCTGAGTTCACAGAACTATTCCCAATGGGAAAACAACTAGATGAATTGAAGTATGTGTATCAATACATCTTCACAATCAATTTTCAAAGTATATTGGTTGTTTGTGTCATAGTCACATTGTTCTTCTTCATATTCTACCAAATATTCCATGGCATGTTCTTTTGGTTCTTGGAACTACGGTTGAATAACGAGTTGCTTGATCTCGAAGGAGCAAATTATCTAACGTCCGGAGCTGCACCCAGTAATAACCATGTTACCCTCTTCCAAGTTCTCCTCCATACCAATAGTTGGAATATGGCAGATATATTAGAAGAAGGGGATTTCGACAAGGAGAGAGGACCAAAGCTTAGAGCGTTGATGAAATTGCCCCCATTGGTGAGATATGGAATGCATGGTACAACAAAAAATAATGATTGTCCCATTTGCTTGGAAGATTTTAATGCTGGACAATTTTGCCAAATATTTCCATCGTGCAAACACATGTATCATTCAAATTGTATAGATAGTTGGTTGAAGAAGAAGCTAACATGCCCAGTTTGTCGTAGTTGCATTGTGTCCAGAATGATGATAACTTCGAATTCGTCGTGTTCTATTCATGTATGTAACTTTTTTTTTATTTTGTTAATAATGAAAGTGCTAGCAATTACGAAGGACCTAATAATGAACGAACTTTGCTGTGGCCTATATATGTGA 696 0.3678 MAEFTELFPMGKQLDELKYVYQYIFTINFQSILVVCVIVTLFFFIFYQIFHGMFFWFLELRLNNELLDLEGANYLTSGAAPSNNHVTLFQVLLHTNSWNMADILEEGDFDKERGPKLRALMKLPPLVRYGMHGTTKNNDCPICLEDFNAGQFCQIFPSCKHMYHSNCIDSWLKKKLTCPVCRSCIVSRMMITSNSSCSIHVCNFFFILLIMKVLAITKDLIMNELCCGLYM* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1574 231 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Amo08g1574 231 SUPERFAMILY RING/U-box 139 195 - -
Amo08g1574 231 PANTHER - 25 186 - -
Amo08g1574 231 SMART ring_2 140 181 IPR001841 -
Amo08g1574 231 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 186 - -
Amo08g1574 231 Pfam Ring finger domain 138 182 IPR001841 -
Amo08g1574 231 CDD RING-H2_PA-TM-RING 139 182 - -
Amo08g1574 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1574 Amo-Chr8 25860346 25861161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1574 32 183 C3H Transcription Factor Family AT1G53010 30.818 1.42e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1574 - - aip:107610754 378.252