Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1573 ATGGCTTGGTATTTGTTCATCACTATTGATATTCAAACTATCTTGATTGCTATTGGCATAGTCACAATGATCTTCTTCATCTTTTACCAAATCTTATATGGATTGTTCTTTTGGTACTTGGAATTAAGCCCAGAGGAATTGCGTGATATCGAAGAAGCGATCCATCAATCATATGGAGATACACCTAATCACCATATTATCCTCTTGGAAGCTCTTATCCAGAGAGATATCGAAAATTCGTCGGTCGTGGTGGACGACAAGGAACGAGGACAGAAACTTAGAGCCTCCAATAAACTGCCACCATTGGTGAGCTATGGCATGCATGGCACAACGAAAAGTCGTTGCGATGAATGTGCCATTTGCTTGGAAGATTTTGAAGATGGACAATGTTGTCAAGTGTTTCCTGTGTGCAAGCACATGTATCATTCAAATTGTATAGACACTTGGTTACAAAAGAATGTGACATGCCCAATATGTCGTAGTTGCATTGTGTAA 495 0.396 MAWYLFITIDIQTILIAIGIVTMIFFIFYQILYGLFFWYLELSPEELRDIEEAIHQSYGDTPNHHIILLEALIQRDIENSSVVVDDKERGQKLRASNKLPPLVSYGMHGTTKSRCDECAICLEDFEDGQCCQVFPVCKHMYHSNCIDTWLQKNVTCPICRSCIV* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1573 164 Pfam Ring finger domain 116 160 IPR001841 -
Amo08g1573 164 SMART ring_2 118 159 IPR001841 -
Amo08g1573 164 SUPERFAMILY RING/U-box 117 163 - -
Amo08g1573 164 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 7 164 - -
Amo08g1573 164 PANTHER - 7 164 - -
Amo08g1573 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 163 IPR013083 -
Amo08g1573 164 CDD RING-H2_PA-TM-RING 117 160 - -
Amo08g1573 164 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1573 Amo-Chr8 25853464 25853958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1573 1 161 C3H Transcription Factor Family AT1G53010 30.357 1.69e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1573 - - adu:107462572 298.516