Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1540 ATGGGAATTCAAGAGAAAGACCCTCTCTCGCAATTGAGTTTACCGCCGGGTTTCCGATTTTATCCGACGGACGAGGAGCTTCTCGTTCAGTATCTGTGCCGCAAGGTTGCTGGCCACCATTTCTCCCTGGAAATCATTGGCGAAATTGATTTGTATAAGTTCGACCCTTGGGTTCTTCCAAGTAAGGCAATTTTTGGCGAGAAAGAATGGTACTTCTTTAGTCCGAGGGATAGGAAGTATCCGAATGGATCGCGACCCAATCGAGTAGCCGGGTCGGGTTACTGGAAAGCTACCGGAACCGATAAGACTATCACGACCGAAGGAAGGAAAGTTGGTATCAAGAAAGCTCTGGTTTTCTACATTGGTAAGGCACCCAAAGGCACCAAAACAAACTGGATCATGCACGAGTATCGCCTCCTAGACTCTACCCGCAAGAACGGGAGCACCAAGCTTGACGATTGGGTTCTGTGCCGGATATACAAGAAGAATTCAAGCGCACAGCAGAAGGTACCAAACGGCGTCGTTTCGAGTAGCGAGCAATATGCCACGCAATACAGCAACGGATCTTCTTCAAACTCCTCTTCCTCCCACCTCGACGAGGTGCTCGAGTCCCTGCCAGAGATCGACGACCGTTGCTTCGCCTTGCCACGTGTCAACTCCTTAAGAGCGCTGCAGCAGCAGCGCCATCACCAAGAAGACACCAAGGTCGGCCTACTCCAACAGCAACAGGAACAGGGTCTCGTAGCCGGCACCGGTAGTTTCTTGGACTGGGCTTCCGGGCCGGGGATTCTGAACGATTTGGGCCAGGCCCAACAGGGGATTGTTAACTACGGAAATGACCTCTTTGTCCCTTCGGTGTGCCACGTGGATTCCAATTTGGTGCCAGCAAAGATTGAAGAGGAGGTTCAGAGCGGCGTGAAGACTCAATCCGGATTCTTTCAGCAGGGACCGAACCCCAATGACTTTACACAAGCATTCTCAAACCAGCTAGATCCTTACGGGTTTAGTAGGTACTCGGTTCAACCGGTGGGGTTCGGGTTCAGGCAATGA 1050 0.5162 MGIQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKTITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSTRKNGSTKLDDWVLCRIYKKNSSAQQKVPNGVVSSSEQYATQYSNGSSSNSSSSHLDEVLESLPEIDDRCFALPRVNSLRALQQQRHHQEDTKVGLLQQQQEQGLVAGTGSFLDWASGPGILNDLGQAQQGIVNYGNDLFVPSVCHVDSNLVPAKIEEEVQSGVKTQSGFFQQGPNPNDFTQAFSNQLDPYGFSRYSVQPVGFGFRQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1540 349 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Amo08g1540 349 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Amo08g1540 349 PANTHER NAC TRANSCRIPTION FACTOR 56 1 316 - -
Amo08g1540 349 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Amo08g1540 349 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 316 - -
Amo08g1540 349 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1540 Amo-Chr8 25261314 25263269 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1540 1 335 NAC Transcription Factor Family AT1G52890 57.522 5.03e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo08g1540 NAM 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1540 - - gmx:100170718 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1475 18 28181464 28183452 Amo08g1540 08 25261314 25263269 hybridization