Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1517 ATGGAGCACGCCGAATTATCCACTGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACGTGTCCACTAAGCTCATCTCTGGTACAACCCTTCAGCTCCTACGCCGTTACGACCATCGTTCTGAAACCCACCGTGCCCAATTGCTACATGAGGATGGTCCGGCTTATGTTCGCATGTTTGTTCATGTATTGCGTGATATTTTCAAAGAAGAGACTGTAGAATATGTTCTAGCTTTGATAGATGAGATGCTCACAGCCAATCCTAAAAGAGCAAGACTGTTGCTTTGGAGAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCTTTAATAGTTAGTGCCAGGCCCAAAAATCAGAATGGCGGTGTTGTAAATTCAGAATCAAACTCAAAGAAAGCATTTACCACGATTGAAGATGTTCTAGGAGGATTGGTAAAATGGCTTTGCGAACAGTTGAAGAAGCCTTCTCATCCTACACGGGGTGTTCCAACTGCCATCAATTGCCTGGCAACTCTACTTAAGGAACATGTGGTTAGGTCTTCCTTTGTTCAAGCAGACGGAATCAAGTTGCTTGTACCTTTGATTTCTCCTGCATCCACCCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGTGTATGGCTCTTATCCTACTATGAACCGGCAATTGAATACTTGACTACCTCAAGAACCCTTCCTTCTCTTGTTGATGTTGTTAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTTGTTGTCCTTACCTTTAAGAACTTGCTATCAAAAGGGACATTGGCTGCTCAAATGATTGACCTTCAGCTACCACAAGTTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGGATTGAATTACCTGGAGGATGGGCTTAAGGATAGCATTAAGAAATTAAGTTCTTTTGATGTGTATAAGCAAGAAGTTCTCCTTGGCAATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTTTGGCGAGATAATATTACCCATTTTGAAGAGAATGACTTCCAGATTATAAGGGTTCTAATAACAATTTTGGACACTGGTAGCAATCCAAGGACTTTGGCTGTTGCTTGCTTTGACCTTTCGCAGTTCATCCAGCACCATCCTTCTGGGCGTCTCATTGTGGCGGACCTCAAGGCGAAGGAACGAGTAATGAAACTAATGAATCATGAGAATGCTGAAGTTACTAAGAATGCGCTGCTCTGCATCCAAAGACTTTTCTTAGGTGCAAAGTATGCCAGCTTCTTGCAGGCTTAG 1305 0.4276 MEHAELSTEQVLRRDIPWETYVSTKLISGTTLQLLRRYDHRSETHRAQLLHEDGPAYVRMFVHVLRDIFKEETVEYVLALIDEMLTANPKRARLLLWRGNWFIQEKSCKILALIVSARPKNQNGGVVNSESNSKKAFTTIEDVLGGLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEHVVRSSFVQADGIKLLVPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLTTSRTLPSLVDVVKSSTKEKVVRVVVLTFKNLLSKGTLAAQMIDLQLPQVVQSLKAQAWSDEDLLEGLNYLEDGLKDSIKKLSSFDVYKQEVLLGNLDWSPMHKDPIFWRDNITHFEENDFQIIRVLITILDTGSNPRTLAVACFDLSQFIQHHPSGRLIVADLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1517 434 Pfam V-ATPase subunit H 95 305 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo08g1517 434 Gene3D - 326 426 IPR038497 -
Amo08g1517 434 SUPERFAMILY ARM repeat 8 424 IPR016024 -
Amo08g1517 434 Gene3D - 3 313 IPR011989 -
Amo08g1517 434 SMART arm_5 177 222 IPR000225 GO:0005515
Amo08g1517 434 SMART arm_5 223 264 IPR000225 GO:0005515
Amo08g1517 434 SMART arm_5 384 424 IPR000225 GO:0005515
Amo08g1517 434 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 434 - -
Amo08g1517 434 PIRSF V-ATP_synth_H 1 433 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo08g1517 434 Pfam V-ATPase subunit H 311 423 IPR011987 GO:0000221|GO:1902600
Amo08g1517 434 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 434 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1517 Amo-Chr8 24885672 24890682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1517 1 434 Primary Pumps ATPases(2) AT3G42050 73.836 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1517 K02144 - gmx:100796479 740.339