Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1494 ATGCAAAACAAGAAAGATCTATGGTTTTGGTCCATTCTATTCTCATTTATATTAAGAAACTCTACTTCACTGGACAATATAACTCCTGTTCAATCCATCACTGATGGAGAGACATTAATTTCGAGTGGAGGAACCTTTGAACTTGGCTTCTACAGCCCCGGAAATTCAAAGGGCCGATACTTAGGAATCTGGTACCATAACATATCCCCTCAGGTAGTGGTCTGGGTGGCTAATAGAGAAAAACCGCTCAACAACACCTCCGGAGTTCTAAAACTCACCGGCGAAGGACTTGTTGTCCTTATTGATGGCAGCACCAACGGCAGCCTTGTATGGTCCTCCAACATGTCAAGCAAAGCAGGAGACAAACGGAATCCGATTGCACAGCTCTTGGAATCAGGAAATCTTGTTGTCAAAGATGGTCATAATGGTGACCACTTTCTGTGGCAGAGCTTTGATTATCCTTGTGATACATTCGTGCCCGGAATGAAGCTGGGATGGGATCTTGGGACAAGCCTAGAGAGAACTCTATCATCTTCAAAAAGTACCGATGATCCCGGCCGCGGACACTACACATTTAGAATAGACCTTCGAGGCGATCCGCAAATAGTTCTAATGAATGGAAATGCCACAGCAATTAGGGTAGGGCCATGGAATGGGCTAATGTTTTCTGGAGCTACACTTTATTTGCGCTATAGCCAATTCTCATCTCAATTTGTTTTCAATGAAAAAGAGGTGTTTGTTAGGTTCAGACCAGAAAATACATCCAAATATATTAGAGGTGTAGTGTACCCTTGGGGAGGTATTCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACCCTTATTTCTATACCGGAGGCTGAATGTGACAAGTATGCTCTGTGTGGTGCAAATTCTATTTGCAGTACTACCCCTACTCCTGTCTGTTCATGCCTTGAAGGATTCGCACCAAAATATCCTGGAAAATGGAAGGAATCTGATTGGTCTGATGGTTGTGTTAGGATCACTCCTTTAAGTTGCAGCAGAGATGGATTCKAGAAGGTCACCYGCATAGTYTTGCCGGACACGTCTGCTTCTTGGTATAACAGGACCATGAACCTGCTGGAATGCAAGGAATTCTGTCTGAAAAATTGTTCTTGTACGGCATATTCCAATTTGGATATCCGTGATGGAGGAAGCGGTTGCTTGATCTGGTTTCATGATCTTATTGACATTAGACAAGGGACACAAGACTTCTATATTCGAATAGATGATAAGAAGAAAAATTATTCCGGCAAGAGGAAGCTAGAAGGCATCATTTTTGGCTCTATAGTGTTCATCACGATCATAATACTTGGACTGAAATTATTTCTAAGGAGAAAAAAACTTGAGGATCCAGATATATTTTGGTTGAAACAACATGTTCGCAAAATGGAAAAGGAAGACGCGGACCTTCCAACATTTGATTTATCAACTATAATTTATGCTACTGATCAATTTTCTAGCAGTAATGAAATGGGAAGAGGAGGATATGGACCAGTTTATAAGGGTGTACTTGCAAACGGGACAGAGATTGCAGTCAAGAGACTTTGCAAGAACTCCGACCAAGGACTGCAAGAGTTCAAAACGGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTCGTAAAGCTTCTTGGTTGTTGCATTCAGCAAGAAGAGAAACTTTTGATTTATGAGCTCATGCCCAACAGGAATGATGCTAGAAGAAAATTATTAGATTGGACTAAGCGCTTTCACATTATTAGTGGCACAGCTAGAGGCCTAGTCTATCTGCATCAGGACTCTAGGCTAAGAGTCATTCATAGAGATCTAAAAACTAGTAATATTCTTCTTGACGAAGAKATGAATGCAAAAATATCAGACTTCGGTCTTGCTAGGACATTTGCAAGTGATCAGACTGAAGACAAGACTGGAAGAGTGGTGGGAACTCATGGTTATATTTCGCCCGAGTATGCAGTGCGTGGATCTTTCTCAATGAAATCTGATGTGTTCGCCTTTGGTGTAATCGTGCTTGAGGTAGTCAGTGGGAGGAAGACAAGAGAGTTCTGTGACCCAGATCAAAGTCTTAACCTTCTGGGATTTGCATGGAAGCTATGGAATGAGGAGAGGACTTTGGAGCTGGTAGATGAATCACTGCGTGATTCGGTGAATGAAGATGAAGCATTGAGATGTATTCAGACAGGGCTGTTGTGTGTGCAAGAGAGACCAGAACATAGGCCTAACATGTCATCTGTAGTTCGTATGTTGGATGATGATAAACCATTGCCTCGGCCAAGGTTGCCGGCATTTTATTCACACCAACAAGATTCTACACTGATTGAAGGTGAAGATGGTGAAGAAGTTCATTCAGCAAATGAGGTTACCATATCATTGTTAGGGGCAAGGTAG 2418 0.4218 MQNKKDLWFWSILFSFILRNSTSLDNITPVQSITDGETLISSGGTFELGFYSPGNSKGRYLGIWYHNISPQVVVWVANREKPLNNTSGVLKLTGEGLVVLIDGSTNGSLVWSSNMSSKAGDKRNPIAQLLESGNLVVKDGHNGDHFLWQSFDYPCDTFVPGMKLGWDLGTSLERTLSSSKSTDDPGRGHYTFRIDLRGDPQIVLMNGNATAIRVGPWNGLMFSGATLYLRYSQFSSQFVFNEKEVFVRFRPENTSKYIRGVVYPWGGIQVLHWSIQTRGWETLISIPEAECDKYALCGANSICSTTPTPVCSCLEGFAPKYPGKWKESDWSDGCVRITPLSCSRDGFXKVTXIVLPDTSASWYNRTMNLLECKEFCLKNCSCTAYSNLDIRDGGSGCLIWFHDLIDIRQGTQDFYIRIDDKKKNYSGKRKLEGIIFGSIVFITIIILGLKLFLRRKKLEDPDIFWLKQHVRKMEKEDADLPTFDLSTIIYATDQFSSSNEMGRGGYGPVYKGVLANGTEIAVKRLCKNSDQGLQEFKTEVQLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRNDARRKLLDWTKRFHIISGTARGLVYLHQDSRLRVIHRDLKTSNILLDEXMNAKISDFGLARTFASDQTEDKTGRVVGTHGYISPEYAVRGSFSMKSDVFAFGVIVLEVVSGRKTREFCDPDQSLNLLGFAWKLWNEERTLELVDESLRDSVNEDEALRCIQTGLLCVQERPEHRPNMSSVVRMLDDDKPLPRPRLPAFYSHQQDSTLIEGEDGEEVHSANEVTISLLGAR* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1494 805 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Amo08g1494 805 Gene3D - 20 151 IPR036426 -
Amo08g1494 805 Gene3D Hepatocyte Growth Factor 340 417 - -
Amo08g1494 805 CDD PAN_AP_plant 338 418 - -
Amo08g1494 805 Pfam PAN-like domain 342 407 IPR003609 -
Amo08g1494 805 Gene3D Phosphorylase Kinase; domain 1 464 569 - -
Amo08g1494 805 SMART ntp_6 342 418 IPR003609 -
Amo08g1494 805 SUPERFAMILY Protein kinase-like (PK-like) 479 777 IPR011009 -
Amo08g1494 805 PANTHER - 14 801 - -
Amo08g1494 805 Pfam D-mannose binding lectin 73 180 IPR001480 -
Amo08g1494 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Amo08g1494 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Amo08g1494 805 PIRSF SRK 6 805 IPR024171 GO:0004674
Amo08g1494 805 Pfam Protein tyrosine and serine/threonine kinase 498 759 IPR001245 GO:0004672|GO:0006468
Amo08g1494 805 ProSiteProfiles PAN/Apple domain profile. 342 419 IPR003609 -
Amo08g1494 805 CDD STKc_IRAK 501 760 - -
Amo08g1494 805 ProSiteProfiles Protein kinase domain profile. 495 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1494 805 SMART serkin_6 495 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1494 805 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Amo08g1494 805 Gene3D Transferase(Phosphotransferase) domain 1 570 765 - -
Amo08g1494 805 CDD B_lectin 30 154 IPR001480 -
Amo08g1494 805 SMART blect_4 30 154 IPR001480 -
Amo08g1494 805 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 14 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1494 Amo-Chr8 24448552 24451601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1494 452 774 Receptor kinase-like Gene Family AT4G23140 51.632 1.24e-108 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1494 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1494 - - aip:107611884 1566.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1387 18 25641078 25646130 Amo08g1494 08 24448552 24451601 hybridization
Amo03g0249 03 4552993 4557236 Amo08g1494 08 24448552 24451601 PCT