Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1488 ATGCAAAAGCAGAGAGTGCTATGGTTTTGGTCCCTTCTATTCTCATTTATATTAAGAAACTCCACTTCACTAGATAATATAACTCCTGTTCAATCCATCACCGATGGAGAGACATTAATTTCGCTTGGAGGAACCTTTGAACTTGGCTTCTACAGCCCAAAGGGCCGATACTTAGGCATATGGTACCATAACATATTCCCTAAGGTAGTCGTGTGGGTGGCAAACAGAGAAAAACCCCTCAACAACACCTCCGGAGTTCTAAAACTCACCGGCAAAGGACTACTTGTCCTTGTTAATGGCAGCAGCAACAGCAGCATTGTGTGGTCCACCAACATGTCAAGCAAAGTGGAAGATAAATGGAATCCAGTTGCACAGCTCTTGGAGTCAGGAAACCTTGTTGTCAAAGATGGCCATAATGGAGACCACTTTCTATGGCAGAGCTTTGATTATCCTTGTGATACATCGTTGCCAGGAATGAAGCTGGGATGGGACCTTGGAACAGGTCTAGAGAGGACCCTATCATCTTCAAAAAGTATTGATGATCCCGGCCGCGGACACTACACACTTAGAATAGACCTTAGAGGTGATCCACAAATTGTTCTAATGAATGGAAATGCCACAACAATTAGAGTAGGGCCATGGAATGGGCTAATGTTTTCAGGAGCTACAACTTATTTGCGCTATAGTCAATTTTCATCTCAATTTGTTTTCAATGAACAAGAAGTGTTTGTTAGGTTCAGACCGGAAAATACATCCAAATATATTAGAGGTGTAGCGTACCCTTGGGGAGCTTTGCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACCCTTATTTCTATACCGGAGGCCGAATGTGACAAGTATGCTACTTGTGGTGCAAATTCTATTTGCAGTACTACTCCTACTCCTGTCTGTTCATGCCTTGAAGGATTTGCACCAAAATATCCTGCAAAATGGATGGAATCTGATTGTTCTGATGGCTGTGTTAGGATCACTCTTTTAAGTTGCAGCAGAGCTGGATTCAAGAAGGTCACCGGCATAGTGTTGCCGGACACGTCTGCTTCTTGGTATAACAGGACCATGAACCTGCTGGAATGCAAGGAATTCTGTCTGAAAAATTGTTCTTGTACGGCATATTCCGATTTGGATATCCGTGATGGAGGAAGCGGTTGCTTGATCTGGTTTCATGATCTTGTTGACATTAGACAAGGGTCACAAGACTTCTATATCCGAATAGGCATCCTTGTTGGCTTTATATTGTTCATCATGATCATAATACTTGGACTGAAATTATTTCTATGGAGAAAAAAACTTGTGGAGACAGATATATTTTGGTCGAAGCAGCGTGATCACAAACGGGGAAAGGAAGATATGGACCTCCCAACATTTGATTTATCAACCATAGTTCATGCCACTGATCAATTTTCTAGCCGCAACGAATTGGGAAAAGGTGGATACGGACCAGTTTATAAGGGCGTACTTACAAATGGAACCGAGATTGCGGTCAAGAGACTTTCCAAGAACTCCGACCAAGGATTGCAGGAGTTCAAAACGGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTTGTAAAACTTCTTGGTTGTTGCATTCAGCAAGAAGAGAAACTTCTGATCTATGAGCTCATGCCCAACAGAAGTTTGGACTATTTTATTTTTGGTCCATTCCTTTACTATCTTGAATTTATAATCATGTTAACATTTGACGTTCTCAACATGATAGATGATGCTAGAAGAAAATTATTAGATTGGACCAAGCGCTTTCACATTATTAGTGGCACAGTTCGGGGTCTAGTTTATCTGCATCAGGACTCTAGACTAAGAATCATTCATAGAGATCTAAAAACTAGTAATATTCTTCTTGATGAAGACATGAATGCAAAAATATCAGACTTCGGTGTTGCTAGGACATTTGCTGCCGATCAAACTGAGGCCAAAACAAAAAGAGTGATGGGAACTCACGGTTATATTTCTCCTGAGTATGCGGTGCGTGGATCTTTCTCAATGAAGTCTGATGTGTTTGCCTTTGGTGTAATCATGCTTGAGGTAGTCAGTGGGAGGAAGAACAGAGATTTCCGTGTTCCTGACCAAAATCTTAACCTTCTTGGACATGCATGGGAGCTGTGGAATGAGGGGAAGGCTTTGGAGCTTGTAGATGAATCAGTGCGCGATTCGGTCATTGAAGTTGAAGCATTAAGATGTATACAGATAGGGCTGTTATGTGTGCAAGGGAGACCTGAAGATAGGCCTAACATGTCATCTGTAGTTCATATGTTGGATGACGATAAACCACTGCCTCGGCCGAGGCTGCCTGCATTTTATTCACACCAAGAAGACTCTTCATTAAGTAATCATACAATTTATTCAGCAAACGAGGCTTACTGGTCTGGTGGTTGTAGCAGAAGAACACCACTGAGTTGCCATGGAGATGGTTTTAAGAGACTTTCTACATTGGAATTAGCTGACGCTCGGAGATCTTCATGGTTAAACAAAAGTAAATTAAACTGCTCTTGCACTGCTTATGCTGCATTAGATATCAGGAAAGAGGCAAGTGGATGTTTACTGTGGTATGGTGACTTGGAAGATATTAGAGTGCTGAGTGATCCACAGCATGATATT 2652 0.4189 MQKQRVLWFWSLLFSFILRNSTSLDNITPVQSITDGETLISLGGTFELGFYSPKGRYLGIWYHNIFPKVVVWVANREKPLNNTSGVLKLTGKGLLVLVNGSSNSSIVWSTNMSSKVEDKWNPVAQLLESGNLVVKDGHNGDHFLWQSFDYPCDTSLPGMKLGWDLGTGLERTLSSSKSIDDPGRGHYTLRIDLRGDPQIVLMNGNATTIRVGPWNGLMFSGATTYLRYSQFSSQFVFNEQEVFVRFRPENTSKYIRGVAYPWGALQVLHWSIQTRGWETLISIPEAECDKYATCGANSICSTTPTPVCSCLEGFAPKYPAKWMESDCSDGCVRITLLSCSRAGFKKVTGIVLPDTSASWYNRTMNLLECKEFCLKNCSCTAYSDLDIRDGGSGCLIWFHDLVDIRQGSQDFYIRIGILVGFILFIMIIILGLKLFLWRKKLVETDIFWSKQRDHKRGKEDMDLPTFDLSTIVHATDQFSSRNELGKGGYGPVYKGVLTNGTEIAVKRLSKNSDQGLQEFKTEVQLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRSLDYFIFGPFLYYLEFIIMLTFDVLNMIDDARRKLLDWTKRFHIISGTVRGLVYLHQDSRLRIIHRDLKTSNILLDEDMNAKISDFGVARTFAADQTEAKTKRVMGTHGYISPEYAVRGSFSMKSDVFAFGVIMLEVVSGRKNRDFRVPDQNLNLLGHAWELWNEGKALELVDESVRDSVIEVEALRCIQIGLLCVQGRPEDRPNMSSVVHMLDDDKPLPRPRLPAFYSHQEDSSLSNHTIYSANEAYWSGGCSRRTPLSCHGDGFKRLSTLELADARRSSWLNKSKLNCSCTAYAALDIRKEASGCLLWYGDLEDIRVLSDPQHDI 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1488 884 Pfam Protein tyrosine and serine/threonine kinase 481 770 IPR001245 GO:0004672|GO:0006468
Amo08g1488 884 PANTHER - 14 791 - -
Amo08g1488 884 ProSiteProfiles Protein kinase domain profile. 478 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1488 884 Pfam D-mannose binding lectin 70 177 IPR001480 -
Amo08g1488 884 Gene3D Phosphorylase Kinase; domain 1 443 553 - -
Amo08g1488 884 SUPERFAMILY Protein kinase-like (PK-like) 461 788 IPR011009 -
Amo08g1488 884 Gene3D - 20 148 IPR036426 -
Amo08g1488 884 Gene3D Transferase(Phosphotransferase) domain 1 580 776 - -
Amo08g1488 884 CDD PAN_AP_plant 335 415 - -
Amo08g1488 884 Pfam PAN-like domain 819 874 IPR003609 -
Amo08g1488 884 Pfam PAN-like domain 339 404 IPR003609 -
Amo08g1488 884 SMART serkin_6 478 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1488 884 Gene3D Hepatocyte Growth Factor 335 413 - -
Amo08g1488 884 SMART blect_4 30 151 IPR001480 -
Amo08g1488 884 SMART ntp_6 339 415 IPR003609 -
Amo08g1488 884 PIRSF SRK 796 884 IPR024171 GO:0004674
Amo08g1488 884 PIRSF SRK 1 804 IPR024171 GO:0004674
Amo08g1488 884 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Amo08g1488 884 PANTHER - 802 884 - -
Amo08g1488 884 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Amo08g1488 884 CDD B_lectin 30 151 IPR001480 -
Amo08g1488 884 ProSiteProfiles PAN/Apple domain profile. 339 416 IPR003609 -
Amo08g1488 884 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 14 791 - -
Amo08g1488 884 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 802 884 - -
Amo08g1488 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Amo08g1488 884 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 178 IPR036426 -
Amo08g1488 884 CDD STKc_IRAK 484 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1488 Amo-Chr8 24358046 24363817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1488 466 784 Receptor kinase-like Gene Family AT4G11530 53.894 4.07e-113 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1488 PK_Tyr_Ser-Thr 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1488 - - aip:107611884 1331.24